Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04846 ATGGGGACGAAGATGAAGTCCAAAATGCAAGCGGTGAAAAACAAAGACAACGATAAGAAAGCCGTCGGTAATGGAACCAACAAAGAAGACAACGGTGTATTTGCTTCTTGCACCTTCTCTAGCCTTGGTCTTCACCCAACCTTATGTGACCAACTTCGTGAAAGGATGGGTTTTGAAGGTCCAACATTAGTGCAAGCTCAAGCCATTCCTATTGTTCTCTCTGGACGTCACGCACTGGTTAATGCTGCTACTGGTACGGGGAAGACTATTGCATACCTTGCTCCAATAATTCATCATTTACAGAGTAATGAAAAGCGAATTGAGCGATCCGATGGAACATTTGTGCTGGTTCTTGTACCAACGCGTGAGCTATGTTTGCAGGTTCATGAAATTCTTCAGAAGTTATTGCACCGGTTTCATTGGATTGTTCCAGGCTACATTATGGGTGGGGAAAGTAGGTCAAAGGAGAAAGCCAGGCTGCGCAAAGGATTGACGCATTGGAAGCAGGAACGGGAAGATGGGATGGGAGGAATCCGTCAAATCGTTTGTGTCGGAGTATCCTCAATTGCTGAGGGTAGAGATGGCGAAGCATTTGGGGCATGTTCCCACCGAGAATCTCAGTTCTGGTTGGGGCATGTTGTGTCGTTAACAGATACGATGCAGAAGCACAAATAA 675 0.4593 MGTKMKSKMQAVKNKDNDKKAVGNGTNKEDNGVFASCTFSSLGLHPTLCDQLRERMGFEGPTLVQAQAIPIVLSGRHALVNAATGTGKTIAYLAPIIHHLQSNEKRIERSDGTFVLVLVPTRELCLQVHEILQKLLHRFHWIVPGYIMGGESRSKEKARLRKGLTHWKQEREDGMGGIRQIVCVGVSSIAEGRDGEAFGACSHRESQFWLGHVVSLTDTMQKHK 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04846 224 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 69 163 IPR014001 -
Vifa3g04846 224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 163 IPR027417 -
Vifa3g04846 224 MobiDBLite consensus disorder prediction 9 25 - -
Vifa3g04846 224 MobiDBLite consensus disorder prediction 1 27 - -
Vifa3g04846 224 Gene3D - 2 168 IPR027417 -
Vifa3g04846 224 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 66 IPR014014 GO:0003724
Vifa3g04846 224 SMART ultradead3 57 222 IPR014001 -
Vifa3g04846 224 Pfam DEAD/DEAH box helicase 63 163 IPR011545 GO:0003676|GO:0005524
Vifa3g04846 224 PANTHER RNA HELICASE 23 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04846 Vifa-Chr3 1402641843 1402644753 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04846 17 156 Eukaryotic Initiation Factors Gene Family AT3G19760 27.083 2.20e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04846 K14806 - qsu:112007109 246.128