Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04844 ATGGGAACGGAGAGTTATACCTATATGGGACGGAGTTTCAACGAATTCACCATCAACGACGATTCTACTTCCTCCGCTTTCAGCGACTGTAACAGTGATAGATCCGGCGAATTCGCCACCACTTCTTCTCAATCCCGACGACTCATTATCGCCTGTGCTTCCGAAGATTCCGATGACCTCATCCGTCAACTCGTCTCTGATCTTCACTCCTCTTCAATCGAAGAACAGAAACAAGCCGCCATGGAAATCCGGTTAATCGCAAAAAATAAACCGGAAAATCGAATCAAAATCGCGAAAGCCGGCGCGATTAAACCTTTAATTTCTCTAGTATCTTCGCAAGATCTTCAGCTGCAAGAATACGGCGTCACTGCGATTTTGAATCTCTCTTTATGCGACGAGAATAAAGAGCTTATAGCTTCCGCCGGAGCGATTAAGCCGTTAGTTAGAGCGTTAAACTCAGGAACTTCAACGGCGAAGGAGAACGCAGCCTGTGCTTTACTTCGTCTCGCGCAAGTGGAAGGGAACAAGGCAGCGATTGGACGATCCGGTGCGATTCCGTTACTTGTGAAACTTCTAGGAAGCGGCGGAATCCGCGGGAAGAAAGACGCGTCGACAGCGCTGTACACGCTTTGCACGGTGAAGGAGAACAAGATGAGAGCGGTGAAAGCGGGGATTATGAAGGTTTTGGTTGAGTTAATGGCGGATTTTGAATCGAATATGGTGGACAAGTCTGCGTACGTTGTGAGTGTTTTGGTGTCGGTGCCGGAGGCAAAGACGGCGCTGGTGGAGGAAGGTGGCGTTCCGGTGTTGGTGGAGATCGTGGAAGTTGGATCTCAGAGACAGAAAGAAATCGCGGCGGTTATTCTGTTACAGATTTGTGACGACAGCGTGACGTATCGAACCATGGTGGCTCGCGAAGGTGCCATTCCTCCTTTGGTTGCATTGACGCAATCCGGCACTAATCGCGCAAAACAAAAGGCTGAGAAACTGATTGAGCTTCTGAGGCAACCAAGATCTACACGTAGTACATCAGAAATAGTACTAGCATAG 1050 0.4886 MGTESYTYMGRSFNEFTINDDSTSSAFSDCNSDRSGEFATTSSQSRRLIIACASEDSDDLIRQLVSDLHSSSIEEQKQAAMEIRLIAKNKPENRIKIAKAGAIKPLISLVSSQDLQLQEYGVTAILNLSLCDENKELIASAGAIKPLVRALNSGTSTAKENAACALLRLAQVEGNKAAIGRSGAIPLLVKLLGSGGIRGKKDASTALYTLCTVKENKMRAVKAGIMKVLVELMADFESNMVDKSAYVVSVLVSVPEAKTALVEEGGVPVLVEIVEVGSQRQKEIAAVILLQICDDSVTYRTMVAREGAIPPLVALTQSGTNRAKQKAEKLIELLRQPRSTRSTSEIVLA 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04844 349 SMART arm_5 131 171 IPR000225 GO:0005515
Vifa3g04844 349 SMART arm_5 172 212 IPR000225 GO:0005515
Vifa3g04844 349 SMART arm_5 296 336 IPR000225 GO:0005515
Vifa3g04844 349 SMART arm_5 213 253 IPR000225 GO:0005515
Vifa3g04844 349 SMART arm_5 254 294 IPR000225 GO:0005515
Vifa3g04844 349 SMART arm_5 90 130 IPR000225 GO:0005515
Vifa3g04844 349 Gene3D - 37 252 IPR011989 -
Vifa3g04844 349 Gene3D - 253 336 IPR011989 -
Vifa3g04844 349 SUPERFAMILY ARM repeat 56 333 IPR016024 -
Vifa3g04844 349 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 101 143 IPR000225 GO:0005515
Vifa3g04844 349 FunFam U-box domain-containing protein 4 45 349 - -
Vifa3g04844 349 PANTHER U BOX DOMAIN-CONTAINING 60 335 - -
Vifa3g04844 349 Pfam Armadillo/beta-catenin-like repeat 174 211 IPR000225 GO:0005515
Vifa3g04844 349 Pfam Armadillo/beta-catenin-like repeat 91 129 IPR000225 GO:0005515
Vifa3g04844 349 Pfam Armadillo/beta-catenin-like repeat 132 170 IPR000225 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04844 25 338 U-box Gene Family AT2G23140 47.222 4.47e-86 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04844 - - gmx:100797550 573.163