Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04837 ATGGCGGAACCTCGCCCACCCAAGCGCCCCAAAATCAGCAGGGGGGATGATGATTATATGCCTGGAAACATTTTGGAGATCGAGCTTTATAATTTCATGACATTTGATTACTTAAAATGTAAACCCGGCCCTCGCTTGAATCTCGTAATTGGGCCCAATGGTTCTGGAAAGAGTTCTCTTGTATGTGCTATTGCTCTTGGCCTCTGTGGAGAGCCCCAGTTGCTTGGGCGAGCCACGAGTATTGGAGCATATGTGAAGCGGGGAGAAGAGTCTGGTCACATTAAGATTACCTTGAGAGGGGACAGTAAAGAGGAGCGCATTACTATTATGCGTAAAATAAATACTAGCAACAAGTCTGAATGGCTTTTCAATGGAAATGTTGTGCCCAAAAAGGACGTGGCTGAAACCATTCAGAGGTTTAACATCCAAGTAAATAATTTGACTCAATTCTTACCCCAAGACAGGGTCTGTGAGTTTGCAAAGTTAACTCCTGTGCAACTTCTGGAAGAGACCGAAAAGGCTGTTGGTGATCCACAACTTCCAGAGCAACATCGTGCACTAATTGATAAAAGTCGTGCATTGAAGCATGTCGAGCTATCTCTTGAGAAAAACGAAGGAACTTTAAATCAGTTGAAGGAACGTAATGCTGAGTTAGAGAAGGATGTTGAACGTGTTCGTCAAAGAGACGAACTTCTTGCCAAGGCCGAATCAATGAAAAAGAAATTGCCATGGCTGAAATATGATATGCAGCAGGCAGAGTATCGTGAAGCTAAGGAGCGTGAAAAGACCGCTGCAAAGGATTTTGAAAAGGCTGCAAAATTATTAAATGAAGTTAAAGAGCCTATTAAGAAACAAAAAGATGAGAAAGCTGCATTAGATGCAAAATGGAAAAAGGTTAGCAACCGAATAAATGAGAATGCCAAGAAAAGAATGGAACTTATGGAGAAAGAGAACCAATTGGAAGTGGAACAACAAGGGAAGTACAAAGAGATGGACGAGTTGAGGAGGCAGGAAGAAACTCAGCAACAGAAATTTAGAAAAGCTAGGGAGGAACTTGTTGCTGCTGAACTCGAACTTGAGAGTCTAAAACCTTATGCACCTCCCAAAGATGAGCTTCAAAGATTAAGAAATGAAATTTTGGAGTTGGATGTTTCTGCTAATCAAGTGAGACAGAATATGACACAAGCAGAAAACGAAATACATAATAAAAAGCTCTCCTTGAGGAAGTGTAAAGACAGGTTGAAGGAAATGAATAATAAAAGCTCCAAGTGTTTGCATGCATTGCAAAGATCAGGGGTTGAGAAAATATTTGAAGCTTATAAATGGGTCCAAGAGCATCACCATGAATTCCACAAGGAGGTCTATGGTCCAGTTTTAGTTGAGGTGAATGTCTCAGATCAGTCTCATGCTGGGTATCTAGAGGGTCAAGTGGCTTACTACACTTGGAAGTCTTTCATAACACAGGATCCTCGTGATCGGGACTTTTTGGTAAACAACCTACGGTTCTATGACGTACCAGTTATAAATTATACTGGTCGTGATAGCCGACAAAGAGAGCCTTCCGAAATTTCTGCTGATATGCGCGCTCTTGGTATCCACTCCCGTTTGGATCAAATTTTTGACGCCCCTGCTGCTGTCAAGGAGGTGTTGATTAGCCAATTTAAACTTGATCATTCATTTATTGGATCGAAAGAAACTGATCAGAAAGCTGATGAGGTCCCAAAATTGGGAATTACTAGTTTATGGACACCCGAAAGTCACTATCATTGGACTAACTCTAGATATGGAAATCATGTCTCAGCAGTTGTCGAACAAGTGCAACGCCCACAACTTCTGTTAAATAATTCAAATGCGAGGGACATTGAGAATTTGAACTCTCAGGAAAGGGAGTTTCAAGAACAAATTGCTTCCTTGGAGGAAAGTCTCAAAAAGTTTCAAGATGAGGAAAAAAGCTTGAGGAATCAGGCTGCTAGTCTTCGTAAACAGAGGGAGGACATTAGTAATACAGCACAGAATGAGCAAAAGAAACGGCAAGCAATAATTAGGCATATTGAACAAAAGAAACGGATACTGAAATCAATGGAGGAGCAGGATGATTTAGATACCGAGTTAGCGAAGCTTGTTGATCAAGCAACAAAATGTAACATTCAGCGACTCCATAATGCAATTAAAATTAAGAATCTTCTTGTTGAAGCTGTGGATTGCAAAAGAAGTTTAGTTGAACAGCGAATGGCTTGCATTGAATTTGAGGCAAAGATTGGAGAAATGGAGGCCAATCTGAAGCAGCATGAAAATTTTGCTCTGCAAGCCTCATTGCACTTTAATAACTCTAAGAAAGAGGCTGATGAATGTAGACAGAAGCTTACAGATTTATTGAACCGTGCTAAATCAATTGCCCGACTTACTCCTAACCTTGAGAAGGAATTTCTTGAGATGCCTACTACAATTGAGGAGTTGGAAGCAGCTATCCAAGAAACAATTTCTCAAGCTAATTCAATCCTATTTGTCAATCCTAATATATTGGAACAGTATGAGGATCGTCAAAGACAGATAGAAGATCTTGCCAAAAAACTTGATGCAGACAAGAAGGAATCTAGAAAGTGTCTAGCTGAATTGGATAACATCAAGGGAAAATGGCTTCCAACACTCAGAAACCTCGTGGCTCAGATAAATGAAACTTTTAGTCGAAATTTTCAACAGATGGCTGTTGCCGGAGAGGTTTCACTAGACGAGCATGATATGGACTTTGATCAATTTGGAATACATATAAAAGTCAAATTCAGGGAAAATGGACAGCTTGAAGTTCTCAGTGCTCATCATCAATCTGGAGGGGAACGATCAGTTTCAACCATTGTTTATCTTGTTTCCCTTCAAGATCTTACAAACTGCCCATTTAGAGTTGTTGATGAGATCAACCAAGGCATGGACCCAATAAATGAAAGGAAGATGTTTCAGCAATTAGTGAGAGCAGCAAGCAAACCAAATACACCACAGTGTTTCTTACTTACCCCAAAGTTGTTACCAGATTTGCAATATAGTGAGGCATGCAGTATATTGAATGTAATGAATGGCCCTTGGATTGAGCAACCCTCAAAGGTCTGGACTACTGGTGATCGATGGAGTATTATCACTGGACATGTTGGAGAGACTACATGTTAA 3159 0.4046 MAEPRPPKRPKISRGDDDYMPGNILEIELYNFMTFDYLKCKPGPRLNLVIGPNGSGKSSLVCAIALGLCGEPQLLGRATSIGAYVKRGEESGHIKITLRGDSKEERITIMRKINTSNKSEWLFNGNVVPKKDVAETIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPEQHRALIDKSRALKHVELSLEKNEGTLNQLKERNAELEKDVERVRQRDELLAKAESMKKKLPWLKYDMQQAEYREAKEREKTAAKDFEKAAKLLNEVKEPIKKQKDEKAALDAKWKKVSNRINENAKKRMELMEKENQLEVEQQGKYKEMDELRRQEETQQQKFRKAREELVAAELELESLKPYAPPKDELQRLRNEILELDVSANQVRQNMTQAENEIHNKKLSLRKCKDRLKEMNNKSSKCLHALQRSGVEKIFEAYKWVQEHHHEFHKEVYGPVLVEVNVSDQSHAGYLEGQVAYYTWKSFITQDPRDRDFLVNNLRFYDVPVINYTGRDSRQREPSEISADMRALGIHSRLDQIFDAPAAVKEVLISQFKLDHSFIGSKETDQKADEVPKLGITSLWTPESHYHWTNSRYGNHVSAVVEQVQRPQLLLNNSNARDIENLNSQEREFQEQIASLEESLKKFQDEEKSLRNQAASLRKQREDISNTAQNEQKKRQAIIRHIEQKKRILKSMEEQDDLDTELAKLVDQATKCNIQRLHNAIKIKNLLVEAVDCKRSLVEQRMACIEFEAKIGEMEANLKQHENFALQASLHFNNSKKEADECRQKLTDLLNRAKSIARLTPNLEKEFLEMPTTIEELEAAIQETISQANSILFVNPNILEQYEDRQRQIEDLAKKLDADKKESRKCLAELDNIKGKWLPTLRNLVAQINETFSRNFQQMAVAGEVSLDEHDMDFDQFGIHIKVKFRENGQLEVLSAHHQSGGERSVSTIVYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASKPNTPQCFLLTPKLLPDLQYSEACSILNVMNGPWIEQPSKVWTTGDRWSIITGHVGETTC 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04837 1052 Coils Coil 297 358 - -
Vifa3g04837 1052 Coils Coil 372 420 - -
Vifa3g04837 1052 Gene3D - 23 231 IPR027417 -
Vifa3g04837 1052 Coils Coil 841 864 - -
Vifa3g04837 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 778 1003 IPR027417 -
Vifa3g04837 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 992 IPR027417 -
Vifa3g04837 1052 Coils Coil 621 697 - -
Vifa3g04837 1052 Coils Coil 194 235 - -
Vifa3g04837 1052 Gene3D - 841 1010 IPR027417 -
Vifa3g04837 1052 FunFam Structural maintenance of chromosomes 5 848 1019 - -
Vifa3g04837 1052 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 1 1045 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Vifa3g04837 1052 MobiDBLite consensus disorder prediction 653 674 - -
Vifa3g04837 1052 Pfam RecF/RecN/SMC N terminal domain 24 993 IPR003395 -
Vifa3g04837 1052 Coils Coil 774 794 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04837 Vifa-Chr3 1399138210 1399156182 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04837 5 1041 Structural Maintenance of Chromosomes family AT5G15920 61.909 0.0 1297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04837 K22803 - gmx:100778678 1689.09