Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04826 ATGGCATTGGTGATGATGCTTCCTCAAACAAATGATTCAGAAGATACAACAATTATCAAACTCGAATCAGCATATTCTGATTTAGAATCACTTCTTCAAACATCAAAACAAATGGAACAAAACATGGAAACAATGGAAACAAGGTTTGATCTTTTACAAGGATCAATAACAACAGCATCAAGAAGAATCAACCCCTTACAGTCTTTGTCCATGTCAAGAAAAGCACTTGATACAAGAATCAACAGAGCAATTTCACCAGCTCTTGCACTTCTCGAAACATTCAAACTCGCGGAATCGCTTCAAAACAATCTCCTTAACCTCTCTTCAAAGCTATCAACTGAAAACTCACATCAAAAGAGGCTTCAGAAGCTTCTTGATTACATGGATTGTGTTGATCAGTTGAATTCAGCTATAAACTCTATATGTCAAGTCGTTGAACCGGTTATTATGAGGCTTCAAGAAGTGGTTGAGTTTATAAGTAGAACAAAAGCTGCTGACCAATACAGAACACAGAGGTTAAGAGAAGCACTTATAACTCTTAAAGCACTTTATGAAACTGAGGTTGATGAAATGAGATTTGAAGGATTGTTGGATCAAGCTTTGCTTCATATGCAAGATGAGTTTGAGGCTCTTTTGCTTAAGTTAAAGCATAGGAAGTTGGGTCAATTTTCACACATGCAACATGTTGGTGGTGATGAGAGTGATGATGATTTCAAGGTTACCTTTGAGCTTGGATCTGAGTTGGAACTTGAAGTTCTGAGAAGAATTTCTAACATTCTTGCTGCCAATGATTGCTTAGATATTTGCATTGACATCTATGTTAAGATAAGATATAAAAGGGCTGCAAAAGCATTGATGAAGCTAAACCCGGACTACCTAAAAACATATACCCCAGAAGGAATTGATGAAATGGAATGGGAAAACTTGGAAACATCAATAACCCTTTGGACACAACATTTTGAAGTTGCAACAAAGAAAGTTCTTTTATCAGAAAAGAAACTTTGCGAAAGGGTTTTAGGCGAAATCGTCGATGGACTAATCCATCCAGAATGCTTTGTGAAAATATCAGACAAGATCATGGCTGTGTTCTTTCGATTTGGAGAAGGCGTGGCACGAAGCAACAAAGAGCCACAAAAACTGTTTAAACTACTAGACATGTTTGAGTCATTGGAGAAACTTAAACCGCATGTACTTGAAATCTTTGATGGAGAATCCGGTGAGGATATCTGCGCACGGTTTCGCGAGCTAGAGAAGCTAATCATTGATGCATCAAGCAAAGTTTTTTGGGAATTCGGGTTACAAATAGAAGGAAACGTCGACGGCTTTCTTCCGCCTCCACAAGACGGTTCGGTTCCAAAAATAGTAAGATATGCTGTTAACTATCTTAAGTACTTATCCACGGAGAATTACAGAACAACAATGGCTAAAATTTTAAGAACAGAACAAACATGGAAAACCGAGTTGATGTTATCATCGAAACACGAAACGGATGAAGATTTATTGAAGTATGCTATTAGTAATGTAATGGAAGCACTTCAAAGAAACATAGAATCCAAACGTTTGAGTTCTAAAGACAAGGTTTTGATGAATATTTTCATGATGAACACGTATTGGTATATGTATATGAGAACAAAAAACACAGAACTTGGTGATTTGTTGGGTGAGAAATATATAAAAGAAAGTTACAAAGCAGTGGCAGAAGAATCAGCTTACTTGTACCAGAAGCAAGCTTGGTTGGTTTTGGTGAAGATTTTGGATCATGACATTGATTTAAAGGAACAAAACCAAGGGAAGGAAAAGAGACTTGGAAGGCTGGTGAATGAAAAGATCGAGACATTTTTCAAGTGTTTGAGTGAGATTTGTGAGAGGCATAGGAGTTTTTATAGTATACCTGATGTTGATTTGAGGGAACAAATGAGGGATGCAACAGTGAAACTTGTTGTGCCGATTTATGCTGAGTTTTTGGAGTCTTATTCCGGATTTTTACAAAGGAAAGCTTATCCTAGTCCTCAAAGGATGCAAGGATTGCTTGGAAAAGCTTTTGGTTCTAATAATGATTGGAATTTGAACGATGCTCGTAACTCTCGTTCGTTGGAAACTGATATCCAACGGTCTAGATGA 2121 0.3725 MALVMMLPQTNDSEDTTIIKLESAYSDLESLLQTSKQMEQNMETMETRFDLLQGSITTASRRINPLQSLSMSRKALDTRINRAISPALALLETFKLAESLQNNLLNLSSKLSTENSHQKRLQKLLDYMDCVDQLNSAINSICQVVEPVIMRLQEVVEFISRTKAADQYRTQRLREALITLKALYETEVDEMRFEGLLDQALLHMQDEFEALLLKLKHRKLGQFSHMQHVGGDESDDDFKVTFELGSELELEVLRRISNILAANDCLDICIDIYVKIRYKRAAKALMKLNPDYLKTYTPEGIDEMEWENLETSITLWTQHFEVATKKVLLSEKKLCERVLGEIVDGLIHPECFVKISDKIMAVFFRFGEGVARSNKEPQKLFKLLDMFESLEKLKPHVLEIFDGESGEDICARFRELEKLIIDASSKVFWEFGLQIEGNVDGFLPPPQDGSVPKIVRYAVNYLKYLSTENYRTTMAKILRTEQTWKTELMLSSKHETDEDLLKYAISNVMEALQRNIESKRLSSKDKVLMNIFMMNTYWYMYMRTKNTELGDLLGEKYIKESYKAVAEESAYLYQKQAWLVLVKILDHDIDLKEQNQGKEKRLGRLVNEKIETFFKCLSEICERHRSFYSIPDVDLREQMRDATVKLVVPIYAEFLESYSGFLQRKAYPSPQRMQGLLGKAFGSNNDWNLNDARNSRSLETDIQRSR 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04826 706 PANTHER EXOCYST COMPLEX PROTEIN EXO70 136 661 IPR004140 GO:0000145|GO:0006887
Vifa3g04826 706 Coils Coil 21 48 - -
Vifa3g04826 706 Pfam Exo70 exocyst complex subunit 316 664 IPR046364 GO:0000145|GO:0005546|GO:0006887
Vifa3g04826 706 SUPERFAMILY Cullin repeat-like 171 665 IPR016159 -
Vifa3g04826 706 Gene3D Exocyst complex component Exo70 163 687 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04826 Vifa-Chr3 1396526563 1396528914 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04826 15 669 EXO70 exocyst subunit family AT4G31540 27.504 2.68e-69 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04826 - - aip:107605596 987.638