Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04821 ATGGCAGTACTAACAGAAATAGAGGAAGACGAGCTCGACGAAGAACCAGGTGAGGTTATCGAATCAGCACCGCCTCAAAAGGTTGGCGAAGAGAGACAACTCACTACCAATTCGCCCATCAAGAAGAAGCTCCTTAAACGCGGACTCGGTTGGGAAACCCCCAATTTCAACGATCATGTTACTGTTCATTATCTTCAAACTTTGCTTGATGGAACAATGTTGGGTTCCACTAGGGTTTTGGATTCTCCTGTCACATTTACACTTGGCCAAAGTGAAGTCTTTGCTGGATTGGATGATGGGATTGTCACCATGCAGAAAGGAGAGGTGGCATTGTTTACATTACCTGCTGCTGAGTCTGGAAGCATTCCACGAGAAACCAACTCGGTTGTGCAGTTTGAAGTGGAACTGATTTCTTGGATCACTGTAGTGGATGTTTGCAAAGATGGTGGAGTTATCAAGAAAATTACGGAGAAGGGGAAAGGGAATGATCGGCCCGGTGATCTTGATGAAGTTCTTGTGAAGTATCAGGTGGCACTAGTAGATGGCACTGTTGTTGCGGAAACACCGGAAGAAGGAGTTGAATTCTATGTGAAGGATGGTCATGTTCTTCCTAGACTGCCAAAAGTGATCATGACTATGACCAGGGGAGAGAAGGCTGAATTAATTTTTCAACCTCAATACGCCTTTGGGGAGACGGGGAGAGAAGCTGGTAGCGGGTTCCATTCAATTCCCCCTGACTCAGTGCTGCATGTTAATATTGAATTGGTGTCCTTCAAGCCCGTCATAAATGTTACCGGTGACTCTATGGTGATTAAGAAAATTTTGAAAGAAGGGGATGGTGCTTTCACAGCCAACGAGGGTGCAAATGTTACTGTCAGTTACACAGCTATGCTAGAAGATGGCACAGTATTCGAGAAAAGAGGAGTTGATGAAACTCAGCCCTTGAAATTCGTAACTGATGAGGAACAAGTGATTACTGGTCTAGACCGAGCAGTGGCAACAATGAAAAAGGGCGAGAAGGCCATAATTAGCATACATGCTGATTATGCATTTGGAATGGTGGAAGTGAGAGAAAATCTGGTTATTGTGCCACCAGGCTCGAAAGTAATCTATGACATTGAAATGATCGATTTTATTAAGGAGAAAGCACCATGGGAGTTAAATAATACTGAGAAAGTTGAGGTAGCCGGGAGGAAGAAAGAAGAAGGAAATTTATTATATAAAAGTGGCAAATATCAGCGAGCAGCGAAGAAGTATGATAAGGCTGCTGATTTTGTTAGTGAAGATGGATCCTTTGGTGATGATGAGCAAAAGCTAGCTAAGTCGTTGAGAATTTCATGCTGGTTGAATGGTGCAGCTTGTTGCCTTAAACTGAATGACTTTGCTGGAGCAGTCAAACTATGTACTCAGGTGCTTGATGTGGAGTTTCAGAACGTGAAAGCTTTGTATAGACGAGCGCAGGCATATATAGAGACTGGAGACTTTCTTTTAGCAGATGTAGACATCAAGAAAGCTCTTGAGGTGGATCCACAAAACAGGGAGGTAAAGATGCTGAAAATGAAAGTGAAGCAACTTCGAGCTGATAGTGACAAAAAAGATGCCAAGCTGTATGAAAATATGTTTGCCCATAAAGCGAAGAGATTGAAGGTTGAGAAAGAAGAGGATGAAGCGGTGAAAACGGAAATGGACAATGTTGGTGACAGTGCAGCTCCTTCTGATGGTGGTTTAATTGTTGATTCTTGTTGA 1746 0.4313 MAVLTEIEEDELDEEPGEVIESAPPQKVGEERQLTTNSPIKKKLLKRGLGWETPNFNDHVTVHYLQTLLDGTMLGSTRVLDSPVTFTLGQSEVFAGLDDGIVTMQKGEVALFTLPAAESGSIPRETNSVVQFEVELISWITVVDVCKDGGVIKKITEKGKGNDRPGDLDEVLVKYQVALVDGTVVAETPEEGVEFYVKDGHVLPRLPKVIMTMTRGEKAELIFQPQYAFGETGREAGSGFHSIPPDSVLHVNIELVSFKPVINVTGDSMVIKKILKEGDGAFTANEGANVTVSYTAMLEDGTVFEKRGVDETQPLKFVTDEEQVITGLDRAVATMKKGEKAIISIHADYAFGMVEVRENLVIVPPGSKVIYDIEMIDFIKEKAPWELNNTEKVEVAGRKKEEGNLLYKSGKYQRAAKKYDKAADFVSEDGSFGDDEQKLAKSLRISCWLNGAACCLKLNDFAGAVKLCTQVLDVEFQNVKALYRRAQAYIETGDFLLADVDIKKALEVDPQNREVKMLKMKVKQLRADSDKKDAKLYENMFAHKAKRLKVEKEEDEAVKTEMDNVGDSAAPSDGGLIVDSC 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04821 581 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 287 379 IPR001179 GO:0003755
Vifa3g04821 581 MobiDBLite consensus disorder prediction 557 581 - -
Vifa3g04821 581 Gene3D Tetratricopeptide repeat domain 382 539 IPR011990 GO:0005515
Vifa3g04821 581 SUPERFAMILY FKBP-like 265 396 - -
Vifa3g04821 581 Gene3D - 141 259 IPR046357 GO:0003755
Vifa3g04821 581 Gene3D - 261 381 IPR046357 GO:0003755
Vifa3g04821 581 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 52 137 IPR001179 GO:0003755
Vifa3g04821 581 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 283 376 IPR001179 GO:0003755
Vifa3g04821 581 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 165 256 IPR001179 GO:0003755
Vifa3g04821 581 SUPERFAMILY TPR-like 395 542 IPR011990 GO:0005515
Vifa3g04821 581 FunFam Peptidylprolyl isomerase 384 539 - -
Vifa3g04821 581 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 57 140 IPR001179 GO:0003755
Vifa3g04821 581 SMART tpr_5 445 478 IPR019734 GO:0005515
Vifa3g04821 581 SMART tpr_5 396 429 IPR019734 GO:0005515
Vifa3g04821 581 SMART tpr_5 479 512 IPR019734 GO:0005515
Vifa3g04821 581 Pfam Tetratricopeptide repeat 480 512 IPR019734 GO:0005515
Vifa3g04821 581 SUPERFAMILY FKBP-like 30 141 - -
Vifa3g04821 581 Gene3D - 5 140 IPR046357 GO:0003755
Vifa3g04821 581 SUPERFAMILY FKBP-like 144 259 - -
Vifa3g04821 581 PANTHER PEPTIDYLPROLYL ISOMERASE 141 260 - -
Vifa3g04821 581 MobiDBLite consensus disorder prediction 1 18 - -
Vifa3g04821 581 ProSiteProfiles TPR repeat profile. 479 512 IPR019734 GO:0005515
Vifa3g04821 581 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 168 259 IPR001179 GO:0003755
Vifa3g04821 581 MobiDBLite consensus disorder prediction 1 35 - -
Vifa3g04821 581 FunFam Peptidylprolyl isomerase 260 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04821 Vifa-Chr3 1395636422 1395641336 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04821 27 542 Calmodulin-binding Proteins AT3G25230 52.874 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04821 K09571 - gmx:100798382 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04821 3 1395636422 1395641336 Vifa3g04821 3 1395636422 1395641336 ECH