Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04816 ATGCCTTCCTATGATGCTTTGATGGGTTTTGAAACATCTTTCAAAGGTTGTGTTTTTAGTGTGTTGGATAGTGAGAAACTGGATCTGAAGTTGTTGATTGAAGAGATGGATTCAATTGATGTTCCTTCGGTTTTCATATGTCCAATTTCACTTGAGCCAATGCAAGAGCCTGTGACTCTTTGCACTGGTCAAACCTACGATAGATCCAACATCCTTAAATGGTTTTCACTTGGTCACAAAACATGTCCAACAACAATGCAAGAGCTTTGGGATGAATCAATCACACCCAACAACACTCTCAAACACTTGATCCTCACTTGGTTCTCACAAAAGTACTTGGAAATGAAGAAGAAGCTTGAAGATGTTGAAGGAAGAGTTTTGGAAACATTGGAGACACTTAAGAAGGTGAAGGGTCAAAGTAGAGTGAAAGCTCTTAAGGATCTTAGAAAACTTGTTGTTTCTCATGTTTGTGCAAGAAAAACATTGTTGGAAAATGGTGGGGTTGGTTTGGTTTCATCTTTGTTAGGTCCTTTTACTTCACATGTTGTTGGTTGTGAAGCTATTGGTATCATTGTGAATTTGGATTTGAGTTCAGATTTCAAGAGAAAGAATCTTATGCGTCCATCCAAAGTTTCATTGATTGTTGATATCATGAATGAAGGAACAATTGAAACAAAGATGAATTGTGCTAAATTGATTCAAATGTTGTTGATGGAAGAAAAAGAAACCAAGATTGAGATTGTGTCAAGTTTGAGTCTTTTGGTTGGATTGTTAAGATTGGTGAGAGACAAGAAACATCAAAATGGGATTTTAATTGGTCTCACATTGATTAAAAAAGTACTATGTAGTCATGAATCAATAAGAACTTCTATGATAAGCATAGGAGCAATACCTCAATTGATTGAGATTTTACCAAGTTTGAACAATGAGTGTTTGGAGATAGCACTTTATATATTGGAGATATTGTCAACACTTGAAGAAGGGAAATTGGCATTGAAAGAATGTCCAAACATTATACCAAATGTGGTGAAGATGTTGATGAGAGTTTCAGAAAATTGTACACAATTTGCATTGTCAATTTTGTGGGCTATTTACAAACTTGCACCTGAAGAATGTGCTTCAAAGGCTGTGGAAGCTGGATTGGCTTCAAAACTATTGCTTGTGATTCAAAGTGGTTGTAATCCTGTTTTGAAACAGATGTCATCTGAGTTTTTGAAAATGTGTAGTGTGAATTATTCTACTAGTAGTATTTTTATTTCAAAGTGTATGCTTACTACTACAATACAATGA 1290 0.3519 MPSYDALMGFETSFKGCVFSVLDSEKLDLKLLIEEMDSIDVPSVFICPISLEPMQEPVTLCTGQTYDRSNILKWFSLGHKTCPTTMQELWDESITPNNTLKHLILTWFSQKYLEMKKKLEDVEGRVLETLETLKKVKGQSRVKALKDLRKLVVSHVCARKTLLENGGVGLVSSLLGPFTSHVVGCEAIGIIVNLDLSSDFKRKNLMRPSKVSLIVDIMNEGTIETKMNCAKLIQMLLMEEKETKIEIVSSLSLLVGLLRLVRDKKHQNGILIGLTLIKKVLCSHESIRTSMISIGAIPQLIEILPSLNNECLEIALYILEILSTLEEGKLALKECPNIIPNVVKMLMRVSENCTQFALSILWAIYKLAPEECASKAVEAGLASKLLLVIQSGCNPVLKQMSSEFLKMCSVNYSTSSIFISKCMLTTTIQ 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04816 429 Pfam U-box domain 41 111 IPR003613 GO:0004842|GO:0016567
Vifa3g04816 429 SMART Ubox_2 44 107 IPR003613 GO:0004842|GO:0016567
Vifa3g04816 429 PANTHER WDSAM1 PROTEIN 36 416 IPR045185 GO:0061630
Vifa3g04816 429 SUPERFAMILY RING/U-box 35 111 - -
Vifa3g04816 429 Gene3D - 119 426 IPR011989 -
Vifa3g04816 429 CDD RING-Ubox_PUB 42 91 IPR045210 -
Vifa3g04816 429 ProSiteProfiles U-box domain profile. 40 114 IPR003613 GO:0004842|GO:0016567
Vifa3g04816 429 SUPERFAMILY ARM repeat 212 417 IPR016024 -
Vifa3g04816 429 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 118 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04816 Vifa-Chr3 1394426561 1394427850 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04816 5 429 U-box Gene Family AT3G49810 60.135 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04816 - - gmx:100803878 622.083