Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04806 ATGGATCTTGGTGTAATGAGTTTAGATGGTTTAGTTAGTTCAGATCCTGACCAAAAAACCAAATGGTTCAATGGATCTGGTTTACTCAAACAAGAGAGATCTGGAACATGTACTGAAGATGAGTTGTTAAGAACTTTCAAGCTTGCAAAAACTGATCAAAACCAAAGAAACTCTTGTACCTCTTCTTCTCCTAACTCTTCACTTTTGAGATCTAATGTTACTACTCTTTTCTCTGATGCTCAACACCAACAACAAATGCTTAGTTTCTCAACTCCAAATCCTAAATCAGAATCTTTTTTACTTGACAAAAATACCCCTACATTGTCTTATCCCTATCATCAACATCATAATCATCATCATAATCCAATGTCTAGTTACAACAGAACCACAGGCTATGGTTCTGGAAGCATGCATGGAGGTTTTAATGGTGTTAGAGGACCATTCACACCTTCTCAATGGATGGAACTTGAACATCAAGCTTTGATCTATAAGTATATTACTGCAAATGTTGCTGTGCCTCATCATTTGCTTATTCCTATCAGAAAAGCTCTTGATTCTGCTGGCTTAAGTACCTTCTCATCTGCACTCCTCAGACCTAATGCATTGGGATGGGGAGGATTCCATCTGGGATACTCGAACAACACCGATCCGGAACCAGGAAGGTGTAGACGAACAGATGGAAAGAAATGGCGATGCTCAAGAGATGCCGTTGTCGATCAAAAGTATTGTGAAAGGCATATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCGGGCCAGGCTCTCACCACTGGTGGAACCACAAATACAGCTACTACTAATGTTACTTCTACCATTACTACTCCAAGTGGTTCGTCGAAGCAGATCAATGTTGCTGCTTCTCCTTCTTCATCTATTGTTGTTCCTGGTAGCAACAACGCTACCAACACTCTTTCATTTGCGCATCAGGAACATTCTAAGAATATGAACAGCCTTATTGGACAAGATAATGCTTCTTCTGCTGCCAACACCATCAACAGAATGTTCATGAACAGCAAAGAGAATAACAGCAATACTGAGAGGATGCAGGACGGTTCGGCACTACCGATGCTGCCACCCACCCTTGAGTTGAAACCGAAGGATGATAATTCCTTCATGATTCAGAAACAGCACATTTCTTATGATGAATCTTCAAGGAACAATGAATTCGGGTTTGTTACTTCTGATTCCCTGCTTAACCCTTCACAGAAACCCACTACCTTGCTTGGAACTAGAACCTTTGGTTCATCTTCTCAGAACCCTACAAACCGTGACGTGGGCTCTCAACATTCCCTCAGGCATTTCATCGACGACTTTCCCAAAACTCACTCTGATAATCACAATCATCATAACCGCTCGGGTGGTTTTTCTTGGCCTGAACTCGACATGCAGTCGGATAGGACACAGCTATCAATCTCAACACCATTGACTGCCTCGGATTTCATGTCGTTCCCTTCCTCGGCCACCAATGAAAAACTTACACTATCGCCTCTTAGGCTCTCGAGGGAAATTGACCCTATCCAAATGGGATTAGGTGTTGGAAATAGTACTCTCAACAACAATGAATCATCAAACCCTAGTACTAATCATCCTACCACAAGACAAGCTAATTGGATTCCAATAACTTGGGAGAGTTCAATGGGAGGTCCACTCGGCGAAGTACTTCATCTTAGCAATATTGCTTGCAACGCAAGCGATGATCATTATAGCAATGGCAATGTCAACAACAACAATTCGTCGGCTCTAAATCTCATGACGGATGGTTGGGACAATCACAATAGTCCTCCAATGGGATCATCACCAACCGGCGTACTTCAAAAAACCGCATTCGGATCACTTTCCAATAGTAGCGCCGGAAGCTCTCCAAGGGCCGAAAACAACAAAACTCAAGAAGGAGCAAGTTTGTGCAATGATCATCTAGGATCAACTCTCGGTAATAATAATACTTCCTTTACTCCTTAG 1992 0.4242 MDLGVMSLDGLVSSDPDQKTKWFNGSGLLKQERSGTCTEDELLRTFKLAKTDQNQRNSCTSSSPNSSLLRSNVTTLFSDAQHQQQMLSFSTPNPKSESFLLDKNTPTLSYPYHQHHNHHHNPMSSYNRTTGYGSGSMHGGFNGVRGPFTPSQWMELEHQALIYKYITANVAVPHHLLIPIRKALDSAGLSTFSSALLRPNALGWGGFHLGYSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGQALTTGGTTNTATTNVTSTITTPSGSSKQINVAASPSSSIVVPGSNNATNTLSFAHQEHSKNMNSLIGQDNASSAANTINRMFMNSKENNSNTERMQDGSALPMLPPTLELKPKDDNSFMIQKQHISYDESSRNNEFGFVTSDSLLNPSQKPTTLLGTRTFGSSSQNPTNRDVGSQHSLRHFIDDFPKTHSDNHNHHNRSGGFSWPELDMQSDRTQLSISTPLTASDFMSFPSSATNEKLTLSPLRLSREIDPIQMGLGVGNSTLNNNESSNPSTNHPTTRQANWIPITWESSMGGPLGEVLHLSNIACNASDDHYSNGNVNNNNSSALNLMTDGWDNHNSPPMGSSPTGVLQKTAFGSLSNSSAGSSPRAENNKTQEGASLCNDHLGSTLGNNNTSFTP 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04806 663 MobiDBLite consensus disorder prediction 523 545 - -
Vifa3g04806 663 Pfam WRC 217 259 IPR014977 -
Vifa3g04806 663 Pfam QLQ 147 181 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vifa3g04806 663 SMART QLQ_2 146 182 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vifa3g04806 663 MobiDBLite consensus disorder prediction 248 294 - -
Vifa3g04806 663 ProSiteProfiles QLQ domain profile. 147 182 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vifa3g04806 663 ProSiteProfiles WRC domain profile. 216 260 IPR014977 -
Vifa3g04806 663 MobiDBLite consensus disorder prediction 260 294 - -
Vifa3g04806 663 PANTHER GROWTH-REGULATING FACTOR 5 111 490 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vifa3g04806 663 MobiDBLite consensus disorder prediction 595 663 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04806 Vifa-Chr3 1388276372 1388279305 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04806 1 621 GRF Transcription Factor Family AT2G22840 38.750 6.91e-95 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vifa3g04806 WRC 6.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04806 - - cam:101496763 1001.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04806 3 1388276372 1388279305 Vifa3g04806 3 1388276372 1388279305 ECH