Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04805 ATGGATCTTGGTGTAATGAGTTTAGATGGTTTAGTTAGTTCAGATCCTGACCAAAAAACCAAATGGTTCAATGGATCTGGTTTACTCAAACAAGAGAGATCTGGAACATGTACTGAAGATGAGTTGTTAAGAACTTTCAAGCTTGCAAAAACTGATCAAAACCAAAGAAACTCTTGTACCTCTTCTTCTCCTAACTCTTCACTTTTGAGATCTAATGTTACTACTCTTTTCTCTGATGCTCAACACCAACAACAAATGCTTAGTTTCTCAACTCCAAATCCTAAATCAGAATCTTTTTTACTTGACAAAAATACCCCTACATTGTCTTATCCCTATCATCAACATCATAATCATCATCATAATCCAATGTCTAGTTACAACAGAACCACAGGCTATGGTTCTGGAAGCATGCATGGAGGTTTTAATGGTGTTAGAGGACCATTCACACCTTCTCAATGGATGGAACTTGAACATCAAGCTTTGATCTATAAGTATATTACTGCAAATGTTGCTGTGCCTCATCATTTGCTTATTCCTATCAGAAAAGCTCTTGATTCTGCTGGCTTAAGTACCTTCTCATCTGCACTCCTCAGACCTAATGCATATGCAGTGGGATGGGGAGGATTCCATCTGGGATACTCGAACAACACCGATCCGGAACCAGGAAGGTGTAGACGAACAGATGGAAAGAAATGGCGATGCTCAAGAGATGCCGTTGTCGATCAAAAGTATTGTGAAAGGCATATGAACAGAGGACGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCGGGCCAGGCTCTCACCACTGGTGGAACCACAAATACAGCTACTACTAATGTTACTTCTACCATTACTACTCCAAGTGGTTCGTCGAAGCAGATCAATGTTGCTGCTTCTCCTTCTTCATCTATTGTTGTTCCTGGTAGCAACAACGCTACCAACACTCTTTCATTTGCGCATCAGGAACATTCTAAGAATATGAACAGCCTTATTGGACAAGATAATGCTTCTTCTGCTGCCAACACCATCAACAGAATGTTCATGAACAGCAAAGAGAATAACAGCAATACTGAGAGGATGCAGGACGGTTCGGCACTACCGATGCTGCCACCCACCCTTGAGTTGAAACCGAAGGATGATAATTCCTTCATGATTCAGAAACAGCACATTTCTTATGATGAATCTTCAAGGAACAATGAATTCGGGTTTGTTACTTCTGATTCCCTGCTTAACCCTTCACAGAAACCCACTACCTTGCTTGGAACTAGAACCTTTGGTTCATCTTCTCAGAACCCTACAAACCGTGACGTGGGCTCTCAACATTCCCTCAGGCATTTCATCGACGACTTTCCCAAAACTCACTCTGATAATCACAATCATCATAACCGCTCGGGTGGTTTTTCTTGGCCTGAACTCGACATGCAGTCGGATAGGACACAGCTATCAATCTCAACACCATTGACTGCCTCGGATTTCATGTCGTTCCCTTCCTCGGCCACCAATGAAAAACTTACACTATCGCCTCTTAGGCTCTCGAGGGAAATTGACCCTATCCAAATGGGATTAGGTGTTGGAAATAGTACTCTCAACAACAATGAATCATCAAACCCTAGTACTAATCATCCTACCACAAGACAAGCTAATTGGATTCCAATAACTTGGGAGAGTTCAATGGGAGGTCCACTCGGCGAAGTACTTCATCTTAGCAATATTGCTTGCAACGCAAGCGATGATCATTATAGCAATGGCAATGTCAACAACAACAATTCGTCGGCTCTAAATCTCATGACGGATGGTTGGGACAATCACAATAGTCCTCCAATGGGATCATCACCAACCGGCGTACTTCAAAAAACCGCATTCGGATCACTTTCCAATAGTAGCGCCGGAAGCTCTCCAAGGGCCGAAAACAACAAAACTCAAGAAGGAGCAAGTTTGTGCAATGATCATCTAGGATCAACTCTCGGTAATAATAATACTTCCTTTACTCCTTAG 1998 0.4244 MDLGVMSLDGLVSSDPDQKTKWFNGSGLLKQERSGTCTEDELLRTFKLAKTDQNQRNSCTSSSPNSSLLRSNVTTLFSDAQHQQQMLSFSTPNPKSESFLLDKNTPTLSYPYHQHHNHHHNPMSSYNRTTGYGSGSMHGGFNGVRGPFTPSQWMELEHQALIYKYITANVAVPHHLLIPIRKALDSAGLSTFSSALLRPNAYAVGWGGFHLGYSNNTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGQALTTGGTTNTATTNVTSTITTPSGSSKQINVAASPSSSIVVPGSNNATNTLSFAHQEHSKNMNSLIGQDNASSAANTINRMFMNSKENNSNTERMQDGSALPMLPPTLELKPKDDNSFMIQKQHISYDESSRNNEFGFVTSDSLLNPSQKPTTLLGTRTFGSSSQNPTNRDVGSQHSLRHFIDDFPKTHSDNHNHHNRSGGFSWPELDMQSDRTQLSISTPLTASDFMSFPSSATNEKLTLSPLRLSREIDPIQMGLGVGNSTLNNNESSNPSTNHPTTRQANWIPITWESSMGGPLGEVLHLSNIACNASDDHYSNGNVNNNNSSALNLMTDGWDNHNSPPMGSSPTGVLQKTAFGSLSNSSAGSSPRAENNKTQEGASLCNDHLGSTLGNNNTSFTP 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04805 665 MobiDBLite consensus disorder prediction 525 547 - -
Vifa3g04805 665 Pfam QLQ 147 181 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vifa3g04805 665 SMART QLQ_2 146 182 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vifa3g04805 665 Pfam WRC 219 261 IPR014977 -
Vifa3g04805 665 ProSiteProfiles QLQ domain profile. 147 182 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vifa3g04805 665 MobiDBLite consensus disorder prediction 249 296 - -
Vifa3g04805 665 MobiDBLite consensus disorder prediction 262 296 - -
Vifa3g04805 665 ProSiteProfiles WRC domain profile. 218 262 IPR014977 -
Vifa3g04805 665 PANTHER GROWTH-REGULATING FACTOR 5 107 492 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vifa3g04805 665 MobiDBLite consensus disorder prediction 597 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04805 Vifa-Chr3 1388276372 1388279305 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04805 1 623 GRF Transcription Factor Family AT2G22840 38.629 2.04e-93 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vifa3g04805 WRC 6.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04805 - - cam:101496763 994.956