Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04801 ATGAAGTCTATGATGAATGATAGTAATAACACTAGTGATGATGGAAACAATCATAACTGGTTAGGTTTCTCTCTCTCACCCTACCATATGAAAATGGAGCTTACTTCTTCTGACCCTTCTCATCAGTACTATCATCATGATAACAACCAACCTTCTCATTCTGTTCTTGCTCCCTCAAACTTCTACATGTCACCTTCACAACATTTAAACATTAACAACACTTCTTCATTATGTTATTATGGTGTTGGATCAGATAACAGTAGTTCCTTTCATTCTTCTTTACCTATGATGCCTCTTAAATCTGATGGTTCTCTTTGCACTATGGAAGAAGCTCTCTCTACTTCACAATCTCAAGTGATGATACCAACTTCATCTCCAAAACTAGAAGATTTTCTAGGTGGTGCAACAATGGAAACTCATCATCATGAGTATGAAGGACATGAGAGAGAAACAATGGCTTTATTAAGCTTAGACAGCATCTACTACAACAACAATGGAGAACATGAAACAAATAGAGAACATTCATCTCTTGACATTTCATCCTACTATTCAGGCTTTGCTTGTCATGGAATGTATCAAGCACCATTGATGGAACAACAACAACAAGAAGAAACAAAGGAAGAAAGCATCTATTGTTTCAAGAACTTTGTGGCCCCTAGAGATTATTCCATGGAGCAGCATCATCGTCAAGGGAATAACAACAATGTTGGTGGTGTTGCAGATGATGGTTCTGTTGGAACAGTTAATGGCTGTGGAGAGTTACAGTCATTGAGCCTTTCGATGAGTCCTGGTTCTCAATCAAGTTGTGTCACTGTTCCAACTCAGATTTCACCTTCCGGTAATAATGATTCTGTTGTTGTTGAAGCTAAAAAGAGAGGACATGGTAAAGTTGGACAAAAGCAACCTGTTCATAGGAAATCTATTGATACATTTGGTCAGAGAACTTCTCAGTATAGAGGAGTAACTAGGCATAGATGGACAGGTAGATATGAGGCACATTTATGGGATAACAGTTGCAAGAAGGAAGGGCAAACAAGGAAAGGAAGACAAGGTGGTTATGATATGGAAGTGAAAGCTGCAAGAGCTTATGATCTTGCTGCTCTCAAATATTGGGGACCTTCAACCCACATCAACTTTCCGCTAGAGAACTACCGTAGTGAGCTTGAAGAAATGAATAACATGAATAGGCAGGAATATGTTGCTCACTTGAGAAGAAAGAGTAGCGGCTTTTCGAGGGGTGCATCAATGTATAGAGGAGTGACAAGGCACCATCAACATGGTAGATGGCAAGCAAGAATAGGCAGAGTTGCCGGAAATAGAGACCTCTATCTTGGAACGTTCAGCACTCAAGAGGAAGCCGCCGAATCATATGATGTAGCCGCAATCAAATTCCGAGGCCTAAATGCTGTCACAAATTTTGAAATATCTAGATACAATGTGGAAAAAATCATGTCAAGCAACACTCTTCTATCAGGTGAACAAGCCAAAAGAACAACAAAGATCAAAGATATTGAAGAACCAAAATGTGAAGCCAAAGAGTGTAACATCAATGTTGTATCAAGTTCAAGTCCAATCCTAAATAACCAAGAAGTTGAAGCTGTGAACAAGAATGAAAACAATTGGAATCAGTCCCCACAACAAGAGTCAAACACATGTGATCAAAAAACTGACTTTTCCATGTCCCTACAAGATATCATTGGGATTGATTCAGTAGATGATTCCTCCAACAAGATGATAAGGACTCATTTTTCAAATTCATCTTCTCTTGTGACTAGTTTAAGTAGCTCAAGAGAATGCAGCCCTGACAACAAAAGCAATGGCCCCACAATGAATTTTCCAAAACCTCCAATAGGGTCTAAAATGGTTAGTCCTATAGCTACTAGGGTTGGATCTTGGTTTCCCTTAGGTGGTTCCATCTCTATGTCACATTTGCCCGTTTTCGCGGCTTGGAGTGATATTTAG 1962 0.3935 MKSMMNDSNNTSDDGNNHNWLGFSLSPYHMKMELTSSDPSHQYYHHDNNQPSHSVLAPSNFYMSPSQHLNINNTSSLCYYGVGSDNSSSFHSSLPMMPLKSDGSLCTMEEALSTSQSQVMIPTSSPKLEDFLGGATMETHHHEYEGHERETMALLSLDSIYYNNNGEHETNREHSSLDISSYYSGFACHGMYQAPLMEQQQQEETKEESIYCFKNFVAPRDYSMEQHHRQGNNNNVGGVADDGSVGTVNGCGELQSLSLSMSPGSQSSCVTVPTQISPSGNNDSVVVEAKKRGHGKVGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEVKAARAYDLAALKYWGPSTHINFPLENYRSELEEMNNMNRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNRDLYLGTFSTQEEAAESYDVAAIKFRGLNAVTNFEISRYNVEKIMSSNTLLSGEQAKRTTKIKDIEEPKCEAKECNINVVSSSSPILNNQEVEAVNKNENNWNQSPQQESNTCDQKTDFSMSLQDIIGIDSVDDSSNKMIRTHFSNSSSLVTSLSSSRECSPDNKSNGPTMNFPKPPIGSKMVSPIATRVGSWFPLGGSISMSHLPVFAAWSDI 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04801 653 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 118 542 - -
Vifa3g04801 653 FunFam AP2-like ethylene-responsive transcription factor 415 476 - -
Vifa3g04801 653 SMART rav1_2 416 480 IPR001471 GO:0003700|GO:0006355
Vifa3g04801 653 SMART rav1_2 317 386 IPR001471 GO:0003700|GO:0006355
Vifa3g04801 653 MobiDBLite consensus disorder prediction 594 612 - -
Vifa3g04801 653 ProSiteProfiles AP2/ERF domain profile. 317 380 IPR001471 GO:0003700|GO:0006355
Vifa3g04801 653 FunFam AP2-like ethylene-responsive transcription factor ANT 316 382 - -
Vifa3g04801 653 CDD AP2 415 476 IPR001471 GO:0003700|GO:0006355
Vifa3g04801 653 Gene3D AP2/ERF domain 316 382 IPR036955 GO:0003700|GO:0006355
Vifa3g04801 653 Gene3D AP2/ERF domain 416 476 IPR036955 GO:0003700|GO:0006355
Vifa3g04801 653 Coils Coil 381 401 - -
Vifa3g04801 653 SUPERFAMILY DNA-binding domain 316 382 IPR016177 GO:0003677
Vifa3g04801 653 SUPERFAMILY DNA-binding domain 415 476 IPR016177 GO:0003677
Vifa3g04801 653 PRINTS Ethylene responsive element binding protein signature 456 476 IPR001471 GO:0003700|GO:0006355
Vifa3g04801 653 PRINTS Ethylene responsive element binding protein signature 318 329 IPR001471 GO:0003700|GO:0006355
Vifa3g04801 653 ProSiteProfiles AP2/ERF domain profile. 416 474 IPR001471 GO:0003700|GO:0006355
Vifa3g04801 653 CDD AP2 316 380 IPR001471 GO:0003700|GO:0006355
Vifa3g04801 653 Pfam AP2 domain 417 466 IPR001471 GO:0003700|GO:0006355
Vifa3g04801 653 Pfam AP2 domain 317 372 IPR001471 GO:0003700|GO:0006355
Vifa3g04801 653 MobiDBLite consensus disorder prediction 594 616 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04801 Vifa-Chr3 1386294521 1386297439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04801 1 497 AP2-EREBP Transcription Factor Family AT4G37750 52.264 1.51e-147 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vifa3g04801 AP2 6.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04801 K09285 - gmx:100798179 752.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04801 3 1386294521 1386297439 Vifa3g04801 3 1386294521 1386297439 ECH
Vifa3g04801 3 1386294521 1386297439 Vifa2g03732 2 1091044996 1091048012 PCT