Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04796 ATGTCCCTCCCTTTAACAGATCTCAAGCGTCGCAACGCCAAACCACATCATCATAATCCTGTCCCCAACACAAAACGCGATGATGAAGAAGGCGGTTTCGACGGCTCATCATTCACCGGCGCTGTATTCAACCTCTCAACCACCATCGTCGGTGCCGGCATCATGGCTCTTCCCGCCGCCGTGAAACAACTCGGTTTGATTCCGGGTTTGGTTATGATTGTTATTTGTGCTATGATAACAGAATCATCAATTATGATTCTCTTGAGATTCACACATGCATCGAAATCTTCGACGTATTCCGGTGTTGTTCTTGATGCGTATGGTGGTGTTGGCCGTTTCTTTTTGTTGCTTTGTATCATCTTCAACAACATGGGAATGCTCGTCGTGTACATGGTCATTATCGGTGATGTGTTCTCGGGAACATGGTCAGAAGGAGTTCAGTATTCAGGAGTTTTAGATGAATGGTTTGGTCAACGTTATTGGTCAACACGTCCTATCTTATTGTTTCTCATAACAATTTTTGTTTTTATCCCTCTCGCATCCTTTAGACGTGTAGATTCACTAAGGTACACATCAGCATTATCAGTGGCACTGGCTATTGTGTTTGTGGTCATAACAACAGGTCTTACAATTGTGAAGTTTTTTAATGGAAGCATTGGTATGCCACACTTAATGCCCAAACTCACAAACGATGAATCCTTTTGGAAGCTCTTCACTACCATCCCTATACTAGTCACTGCTTATATCTGTCATCATAACGTGCATCCTATAGAGAATGAGCTCAAAGATACTTCTCATATGAATGCGATAGTTCGAACATCACTTATACTATGCACATCTGTATACATAGCAACAAGTATTTTTGGAATATTATTATTTGGAGACAATATACAAGATGATGTACTTGCAAATTTTGATGGAGATCTTGGAGTTCCTTATAGTACATTTCTTAATGATGTAGTTAGAGTTAGCTATGGGCTCCACCTTATCCTAGTATTCCCAATTGTGTTTTTCTCACTTAGACTTAACCTAGATGGTCTTTTGTTTCCCCATGCCATTCCACTTGCCTTTGACAACAAGAGATTTTGTTTTGTGACAATAATTCTCATGGCTTTTGTTTTTGTTGGAGCTAATTATGTTCCTAGTATTTGGTGTGCTTTCCAATTCATAGGTGCTACAACTGCCATTTCTGTTGGTTACATTTTTCCAGCTGCCATTGCTCTAAAGGACAATCGTGGGGTTGCAACAAAAAAAGACAAGTTATTATCTTTGTTAGTTATAGTTTTAGCTGTCTCATGTAGCACTATAGCCATATGTAGTAACTTGTATACCTTTAGTAACAAAACAACATTACATGTAGCCTAA 1365 0.3941 MSLPLTDLKRRNAKPHHHNPVPNTKRDDEEGGFDGSSFTGAVFNLSTTIVGAGIMALPAAVKQLGLIPGLVMIVICAMITESSIMILLRFTHASKSSTYSGVVLDAYGGVGRFFLLLCIIFNNMGMLVVYMVIIGDVFSGTWSEGVQYSGVLDEWFGQRYWSTRPILLFLITIFVFIPLASFRRVDSLRYTSALSVALAIVFVVITTGLTIVKFFNGSIGMPHLMPKLTNDESFWKLFTTIPILVTAYICHHNVHPIENELKDTSHMNAIVRTSLILCTSVYIATSIFGILLFGDNIQDDVLANFDGDLGVPYSTFLNDVVRVSYGLHLILVFPIVFFSLRLNLDGLLFPHAIPLAFDNKRFCFVTIILMAFVFVGANYVPSIWCAFQFIGATTAISVGYIFPAAIALKDNRGVATKKDKLLSLLVIVLAVSCSTIAICSNLYTFSNKTTLHVA 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04796 454 MobiDBLite consensus disorder prediction 1 30 - -
Vifa3g04796 454 Pfam Transmembrane amino acid transporter protein 35 436 IPR013057 -
Vifa3g04796 454 PANTHER AMINO ACID TRANSPORTER 32 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04796 Vifa-Chr3 1383993150 1384000682 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04796 8 450 Amino Acid or Auxin Permease AAAP Family AT3G30390 52.679 9.95e-169 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04796 K14207 - gmx:100814034 664.07