Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04785 ATGGAGAGTAAGAATTATCTATATCTTTCATTAGGACCATCAAAGGATGATGATGAAGAAATTACTATAACTCAAAATTCACTTACTTCTCCAAGTATAGATTCTTCGATTTCGAACTCCATGAACACTATGAAGAAAGAGACATGTGAGGAATTTGAGGTAGAGATTGAGAAGGTTCCACTAACAAGGATTGGAAATGTTGATGAATATGGTAATTCAAGGAAGAAACTTAGGCTCACAAAACAACAATCACAAGTGTTGGAACAAAATTTCAGAGACCATTCTACTCTTAATCAGAACCAAAAGCAAGCATTAGCAGAAAGGCTGAAACTACAAGCTAGACAAGTAGAAGTGTGGTTTCAAAATCGGAGAGCCAGGACAAAAGTGAAACAAACAGAATCAGATTTTGAAGTATTAAAGAAGTGTTGCGAAACTCTAACAGAAGAGAACAAGAACTTGAAAAAAGAGGTACAAGAACTGAAGTCAATGCAAGCACCCTTTTATGTGCAGATTCCAGCAGCAACACTAACTTTATGTCCTTTGTGTGGTACCAACAAGAATGGCTCAAAAGCTCGATAA 579 0.3627 MESKNYLYLSLGPSKDDDEEITITQNSLTSPSIDSSISNSMNTMKKETCEEFEVEIEKVPLTRIGNVDEYGNSRKKLRLTKQQSQVLEQNFRDHSTLNQNQKQALAERLKLQARQVEVWFQNRRARTKVKQTESDFEVLKKCCETLTEENKNLKKEVQELKSMQAPFYVQIPAATLTLCPLCGTNKNGSKAR 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04785 192 CDD homeodomain 74 131 IPR001356 GO:0003677
Vifa3g04785 192 Coils Coil 136 163 - -
Vifa3g04785 192 MobiDBLite consensus disorder prediction 1 39 - -
Vifa3g04785 192 Gene3D - 66 136 - -
Vifa3g04785 192 ProSiteProfiles 'Homeobox' domain profile. 70 130 IPR001356 GO:0003677
Vifa3g04785 192 SMART HOX_1 72 134 IPR001356 GO:0003677
Vifa3g04785 192 MobiDBLite consensus disorder prediction 23 39 - -
Vifa3g04785 192 Pfam Homeobox associated leucine zipper 130 163 IPR003106 GO:0006355|GO:0043565
Vifa3g04785 192 SUPERFAMILY Homeodomain-like 68 131 IPR009057 -
Vifa3g04785 192 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 8 184 - -
Vifa3g04785 192 SMART halz 130 171 IPR003106 GO:0006355|GO:0043565
Vifa3g04785 192 Pfam Homeodomain 74 128 IPR001356 GO:0003677
Vifa3g04785 192 ProSitePatterns 'Homeobox' domain signature. 105 128 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04785 Vifa-Chr3 1380761253 1380762618 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04785 68 182 Homeobox Transcription Factor Family AT4G37790 68.644 4.44e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa3g04785 Homeodomain 1.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04785 K09338 - gmx:100807072 209.534