Home
Resource
Genome
JBrowse
Transcriptome
Metabolomics
Pan-genome
External database links
Search
Annotation
Pathway
Duplication type
Transposable elements
Regulatory proteins (RPs)
N6-methyladenosine (m6A)
Browse
Syn-based OGs
Gene-families
Synteny
Syn-Blocks
Syn-Dotplots
Deco-Alignments
Pvu_syntenic
Vvi_syntenic
WGDs- Genes
Anc-Genome
Anc-Reference
Tools
All tools
Genome browsing and annotation
Jbrowse
ShinyCircos
Interproscan
iTAK
Dupgen finder
Homology search and alignment
Bl-match
Seq-fatch
Blast
Diamond
Bi-visualazition
Synteny inference
MCScanX
ColinearScan
Synviso
Syn-blocks-stat
B-Dotter
BB-Dotter
BK-Dotter
Evaluation of nucleotide mutation
ParaAT
KaKs calculator
NG-KaKs-Cal
Paleogenome fractionation
Paleo-gene identifier
Syn-deco generator
Paleo-gene_RI
Paleo-gene_RII
P-index-calculator
Multi-syn-phytre
Gene structure and evolution
Codonw
Cpgfinder
MEME
GSDS
Hmmer
Pfam
FastTree
IQ-Tree2
Multigene-align
Heatmap
Lollipop
Gmapping
GF-Circos
Other auxiliary tools
GC-calculator
Seqlenth-calculator
Genstr-counter
Gam-Calculator
SAF-converter
BDI-finder
BDI-deduplicator
BDI-extractor
BDI-combiner
Seq-corrector
Subtree-splitter
Sptaxon-accessor
SS-extractor
WinO-WGDI
Block_run
KaKs calculate
Blast dotplot
Ks dotplot
Block_info
Correspondence
Statistics
Overview
Phylogenetic tree
Identification of polyploidy
Bar chart
Heatmap
Gene function annotation
Functional genes
Transcription factor
N6-methyladenosine(m6A)
Bar chart
Heatmap
Transposable elements
Documentation
Platform Manual
Pipeline flow examples
L-Wikipedia
Species introduce
Literatures
Common pests
Diseases
Economic value
Planting methods
About
Submission
Community
Contact
Gene search
Sequence information
Show
10
25
50
100
entries
Search:
Select
Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Vifa3g04781
ATGGAAGAGTACACTAATAATCCAAATCCAAATCCAAGGCCAAATTTCTTGTATAATCAGATTCCAATGAACAACACCTTTCATCTTCAATCAAGAGGTTCGGAAAATTGTTTTCAGTCGGAACAAGTACATCACCATCATCATCATCAACAACAAAGTGCTGTGAAAACTGAATCTAATTGTACTTCACAACTTCATACTCCAATTTTTCATTACCCTAATTTAATGAGAACAAATATTATTCCACAAACAATTATGAATCATCATCATCATCAACATGGTGGAGGAGGAAGTCCTAGTAGCTCTAATGAAGCTGATGCTATAAAAGCCAAAATCATTGCTCATCCTCAATACTCTAGTCTCTTACAAGCTTACATGGATTGTCAAAAGATTGGAGCACCACCAGATGTGGTGGCTCGTATGGTGGGAGAATTTGAAGCAAGGCAAGAATTTGAAGCAAGACAAAGATCTTCAGTTAACTCAAGAGAATCTTCAAAAGATCCAGAACTAGACCAATTCATGGAAGCATATTATGATATGCTTGTGAAGTATAGAGAAGAACTAACAAGGCCAATACAAGAAGCTATGGATTTCATGAGAAGAATTGAAACTCAGCTAAATATGCTTTGTAATGGACCCCTTAGGATCTTCCCAGATGATAAAAATGAAGGAGTTGGTTCATCAGAAGAAGAACAAGAGAACAGTGGTGGAGAAACCGATCAAGTTCCAGAAATCGATCCTCGAGCGGAAGACCGTGAACTGAAAAACCATCTCCTGAAGAAATACAGTGGTTACTTAAGTAGTCTTAAACAAGAACTTTCCAAGAAGAAAAAGAAAGGAAAACTCCCTAAAGAAGCTAGACAAAAACTACTCAACTGGTGGGAATTGCACTACAAATGGCCATACCCTTCAGAATCGGAGAAAGTGGCATTGGCTGAATCAACAGGTTTGGATCAGAAGCAAATAAATAACTGGTTTATAAATCAAAGAAAGAGGCACTGGAAACCATCTGAAGACATGCAGTTTATGGTGATGGATGGACTGCATCCACAGAGTGCAGCTCTTTATATGGATGGTCATTACATGCCTGATGGACCTTACCGTTTAGGGCCATAA
1116
0.3826
MEEYTNNPNPNPRPNFLYNQIPMNNTFHLQSRGSENCFQSEQVHHHHHHQQQSAVKTESNCTSQLHTPIFHYPNLMRTNIIPQTIMNHHHHQHGGGGSPSSSNEADAIKAKIIAHPQYSSLLQAYMDCQKIGAPPDVVARMVGEFEARQEFEARQRSSVNSRESSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPLRIFPDDKNEGVGSSEEEQENSGGETDQVPEIDPRAEDRELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKEARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSAALYMDGHYMPDGPYRLGP
371
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Annotation information
Show
10
25
50
100
entries
Search:
Select
Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Vifa3g04781
371
SMART
HOX_1
275
340
IPR001356
GO:0003677
Vifa3g04781
371
Gene3D
-
270
343
-
-
Vifa3g04781
371
PANTHER
HOMEOBOX PROTEIN TRANSCRIPTION FACTORS
42
343
-
-
Vifa3g04781
371
Pfam
KNOX2 domain
165
210
IPR005541
GO:0003677|GO:0005634
Vifa3g04781
371
Pfam
Homeobox KN domain
293
332
IPR008422
GO:0003677|GO:0006355
Vifa3g04781
371
Pfam
ELK domain
253
274
IPR005539
GO:0003677
Vifa3g04781
371
ProSitePatterns
'Homeobox' domain signature.
311
334
IPR017970
GO:0000981|GO:0006355
Vifa3g04781
371
ProSiteProfiles
ELK domain profile.
253
273
IPR005539
GO:0003677
Vifa3g04781
371
SMART
ELK_2
253
274
IPR005539
GO:0003677
Vifa3g04781
371
CDD
homeodomain
285
337
IPR001356
GO:0003677
Showing 1 to 10 of 17 entries
Previous
1
2
Next
Select All
Download Selected Rows
Duplication type information
Show
10
25
50
100
entries
Search:
Select
Gene
Chromosome
Start
End
Duplicated_type
Vifa3g04781
Vifa-Chr3
1380537699
1380548347
Dispersed/Tandem
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Functional genes information
Show
10
25
50
100
entries
Search:
Select
Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Vifa3g04781
29
371
Homeobox Transcription Factor Family
AT4G08150
69.253
7.38e-154
437
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Transcription factors information
Show
10
25
50
100
entries
Search:
Select
Regulatory Factors
Family
Gene
Hmm_acc
Hmm_name
E_value
Clan
TF
HB-KNOX
Vifa3g04781
KNOX2
3.7e-25
No_clan
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows
Pathway information
Show
10
25
50
100
entries
Search:
Select
Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Vifa3g04781
-
-
gmx:100800822
520.39
Showing 1 to 1 of 1 entries
Previous
1
Next
Select All
Download Selected Rows