LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa3g04781	ATGGAAGAGTACACTAATAATCCAAATCCAAATCCAAGGCCAAATTTCTTGTATAATCAGATTCCAATGAACAACACCTTTCATCTTCAATCAAGAGGTTCGGAAAATTGTTTTCAGTCGGAACAAGTACATCACCATCATCATCATCAACAACAAAGTGCTGTGAAAACTGAATCTAATTGTACTTCACAACTTCATACTCCAATTTTTCATTACCCTAATTTAATGAGAACAAATATTATTCCACAAACAATTATGAATCATCATCATCATCAACATGGTGGAGGAGGAAGTCCTAGTAGCTCTAATGAAGCTGATGCTATAAAAGCCAAAATCATTGCTCATCCTCAATACTCTAGTCTCTTACAAGCTTACATGGATTGTCAAAAGATTGGAGCACCACCAGATGTGGTGGCTCGTATGGTGGGAGAATTTGAAGCAAGGCAAGAATTTGAAGCAAGACAAAGATCTTCAGTTAACTCAAGAGAATCTTCAAAAGATCCAGAACTAGACCAATTCATGGAAGCATATTATGATATGCTTGTGAAGTATAGAGAAGAACTAACAAGGCCAATACAAGAAGCTATGGATTTCATGAGAAGAATTGAAACTCAGCTAAATATGCTTTGTAATGGACCCCTTAGGATCTTCCCAGATGATAAAAATGAAGGAGTTGGTTCATCAGAAGAAGAACAAGAGAACAGTGGTGGAGAAACCGATCAAGTTCCAGAAATCGATCCTCGAGCGGAAGACCGTGAACTGAAAAACCATCTCCTGAAGAAATACAGTGGTTACTTAAGTAGTCTTAAACAAGAACTTTCCAAGAAGAAAAAGAAAGGAAAACTCCCTAAAGAAGCTAGACAAAAACTACTCAACTGGTGGGAATTGCACTACAAATGGCCATACCCTTCAGAATCGGAGAAAGTGGCATTGGCTGAATCAACAGGTTTGGATCAGAAGCAAATAAATAACTGGTTTATAAATCAAAGAAAGAGGCACTGGAAACCATCTGAAGACATGCAGTTTATGGTGATGGATGGACTGCATCCACAGAGTGCAGCTCTTTATATGGATGGTCATTACATGCCTGATGGACCTTACCGTTTAGGGCCATAA	1116	0.3826	MEEYTNNPNPNPRPNFLYNQIPMNNTFHLQSRGSENCFQSEQVHHHHHHQQQSAVKTESNCTSQLHTPIFHYPNLMRTNIIPQTIMNHHHHQHGGGGSPSSSNEADAIKAKIIAHPQYSSLLQAYMDCQKIGAPPDVVARMVGEFEARQEFEARQRSSVNSRESSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPLRIFPDDKNEGVGSSEEEQENSGGETDQVPEIDPRAEDRELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKEARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSAALYMDGHYMPDGPYRLGP	371

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vifa3g04781	371	SMART	HOX_1	275	340	IPR001356	GO:0003677
Vifa3g04781	371	Gene3D	-	270	343	-	-
Vifa3g04781	371	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	42	343	-	-
Vifa3g04781	371	Pfam	KNOX2 domain	165	210	IPR005541	GO:0003677\|GO:0005634
Vifa3g04781	371	Pfam	Homeobox KN domain	293	332	IPR008422	GO:0003677\|GO:0006355
Vifa3g04781	371	Pfam	ELK domain	253	274	IPR005539	GO:0003677
Vifa3g04781	371	ProSitePatterns	'Homeobox' domain signature.	311	334	IPR017970	GO:0000981\|GO:0006355
Vifa3g04781	371	ProSiteProfiles	ELK domain profile.	253	273	IPR005539	GO:0003677
Vifa3g04781	371	SMART	ELK_2	253	274	IPR005539	GO:0003677
Vifa3g04781	371	CDD	homeodomain	285	337	IPR001356	GO:0003677

Showing 1 to 10 of 17 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa3g04781	Vifa-Chr3	1380537699	1380548347	Dispersed/Tandem

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa3g04781	29	371	Homeobox Transcription Factor Family	AT4G08150	69.253	7.38e-154	437

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Vifa3g04781		KNOX2	3.7e-25	No_clan

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa3g04781	-		-	gmx:100800822	520.39

Showing 1 to 1 of 1 entries

Previous1Next