Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04781 ATGGAAGAGTACACTAATAATCCAAATCCAAATCCAAGGCCAAATTTCTTGTATAATCAGATTCCAATGAACAACACCTTTCATCTTCAATCAAGAGGTTCGGAAAATTGTTTTCAGTCGGAACAAGTACATCACCATCATCATCATCAACAACAAAGTGCTGTGAAAACTGAATCTAATTGTACTTCACAACTTCATACTCCAATTTTTCATTACCCTAATTTAATGAGAACAAATATTATTCCACAAACAATTATGAATCATCATCATCATCAACATGGTGGAGGAGGAAGTCCTAGTAGCTCTAATGAAGCTGATGCTATAAAAGCCAAAATCATTGCTCATCCTCAATACTCTAGTCTCTTACAAGCTTACATGGATTGTCAAAAGATTGGAGCACCACCAGATGTGGTGGCTCGTATGGTGGGAGAATTTGAAGCAAGGCAAGAATTTGAAGCAAGACAAAGATCTTCAGTTAACTCAAGAGAATCTTCAAAAGATCCAGAACTAGACCAATTCATGGAAGCATATTATGATATGCTTGTGAAGTATAGAGAAGAACTAACAAGGCCAATACAAGAAGCTATGGATTTCATGAGAAGAATTGAAACTCAGCTAAATATGCTTTGTAATGGACCCCTTAGGATCTTCCCAGATGATAAAAATGAAGGAGTTGGTTCATCAGAAGAAGAACAAGAGAACAGTGGTGGAGAAACCGATCAAGTTCCAGAAATCGATCCTCGAGCGGAAGACCGTGAACTGAAAAACCATCTCCTGAAGAAATACAGTGGTTACTTAAGTAGTCTTAAACAAGAACTTTCCAAGAAGAAAAAGAAAGGAAAACTCCCTAAAGAAGCTAGACAAAAACTACTCAACTGGTGGGAATTGCACTACAAATGGCCATACCCTTCAGAATCGGAGAAAGTGGCATTGGCTGAATCAACAGGTTTGGATCAGAAGCAAATAAATAACTGGTTTATAAATCAAAGAAAGAGGCACTGGAAACCATCTGAAGACATGCAGTTTATGGTGATGGATGGACTGCATCCACAGAGTGCAGCTCTTTATATGGATGGTCATTACATGCCTGATGGACCTTACCGTTTAGGGCCATAA 1116 0.3826 MEEYTNNPNPNPRPNFLYNQIPMNNTFHLQSRGSENCFQSEQVHHHHHHQQQSAVKTESNCTSQLHTPIFHYPNLMRTNIIPQTIMNHHHHQHGGGGSPSSSNEADAIKAKIIAHPQYSSLLQAYMDCQKIGAPPDVVARMVGEFEARQEFEARQRSSVNSRESSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLCNGPLRIFPDDKNEGVGSSEEEQENSGGETDQVPEIDPRAEDRELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKEARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSAALYMDGHYMPDGPYRLGP 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04781 371 SMART HOX_1 275 340 IPR001356 GO:0003677
Vifa3g04781 371 Gene3D - 270 343 - -
Vifa3g04781 371 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 42 343 - -
Vifa3g04781 371 Pfam KNOX2 domain 165 210 IPR005541 GO:0003677|GO:0005634
Vifa3g04781 371 Pfam Homeobox KN domain 293 332 IPR008422 GO:0003677|GO:0006355
Vifa3g04781 371 Pfam ELK domain 253 274 IPR005539 GO:0003677
Vifa3g04781 371 ProSitePatterns 'Homeobox' domain signature. 311 334 IPR017970 GO:0000981|GO:0006355
Vifa3g04781 371 ProSiteProfiles ELK domain profile. 253 273 IPR005539 GO:0003677
Vifa3g04781 371 SMART ELK_2 253 274 IPR005539 GO:0003677
Vifa3g04781 371 CDD homeodomain 285 337 IPR001356 GO:0003677
Vifa3g04781 371 MobiDBLite consensus disorder prediction 219 247 - -
Vifa3g04781 371 SMART KNOX2_2 160 211 IPR005541 GO:0003677|GO:0005634
Vifa3g04781 371 Pfam KNOX1 domain 107 141 IPR005540 GO:0003677|GO:0005634
Vifa3g04781 371 SMART KNOX1_2 106 153 IPR005540 GO:0003677|GO:0005634
Vifa3g04781 371 FunFam Homeobox protein knotted-1-like 2 278 340 - -
Vifa3g04781 371 SUPERFAMILY Homeodomain-like 274 348 IPR009057 -
Vifa3g04781 371 ProSiteProfiles 'Homeobox' domain profile. 273 336 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04781 Vifa-Chr3 1380537699 1380548347 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04781 29 371 Homeobox Transcription Factor Family AT4G08150 69.253 7.38e-154 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Vifa3g04781 KNOX2 3.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04781 - - gmx:100800822 520.39