Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04766 ATGGTAACCATTCGTGCAGATGAAATTAGTAAAATTATCCGTGAACGTATTGAGCAATATAATACCGAAGTAAAAATTGTAAATACAGGTACCGTACTTCAAGTAGGCGATGGCATTGCTCGTATTTATGGTCTTGATGAAGTAATGGCGGGTGAATTAGTAGAATTTGAAGAAAGTACAGTAGGCATTGCTTTGAATTTGGAATCAAAAAATGTTGGTGTTGTATTAATGGGTGATGGTTTGATGATACAAGAGGGAAGTTCCGTAAAAGCAACAGGAAGAATTGCTCAGATACCGGTAAGTGAGGGTTATTTGGGTCGTGTTGTAAATGCCCTAGCTAAACCTATTGACGGTCGAGGAGAAATTTCAGCTTCGGAATCTCGGTTAATCGAATCTCCCGCTCCCGGTATTATTTCCAGACGGTCCGTGTATGAGCCCCTTCAAACAGGACTTATTGCTATTGATTCTATGATCCCTATAGGGCGTGGCCAGCGAGAATTGATTATTGGGGACAGACAAACTGGTAAAACAGCAGTAGCTACAGATACGATTCTCAATCAACAGGGACAAAATGTAGTATGTGTTTATGTAGCTATTGGTCAAAAAGCATCTTCTGTGGCTCAAGTCGTAACTTCTTTACAAGAAAGAGGAGCAATGGAATACACTATTATAGTGGCTGAAACAGCAAATTCCCCAGCTACATTACAATACCTCGCGCCTTATATAGGAGCAGCTCTGGCTGAATATTTTATGTACCGTGAACGCCACACTTTAATCATTTATGATGATCCCTCCAAACAAGCACAGGCTTATCGCCAAATGTCTCTTCTATTACGAAGACCACCAGGTCGCGAAGCTTATCCCGGAGATGTTTTTTATTTACATTCGCGTCTTTTGGAAAGAGCCGCTAAATTAAGTTCTCAGTTAGGTGAAGGAAGTATGACTGCTTTACCAATAGTTGAGACCCAATCAGGAGATGTTTCAGCTTATATTCCTACTAATGTAATTTCTATTACAGACGGCCAAATATTCTTATCTTCCGATTTATTCAATGCTGGGATCAGACCCGCAATTAATGTGGGTATTTCCGTTTCCAGATCCCCACAGTTTTTTCCGAAGACTTCCCTTGGATCCATGCATAATATTCTGCCAAATAGATACAAATTTTTTAAATTGAGGACTCCTCCTTAG 1191 0.4013 MVTIRADEISKIIRERIEQYNTEVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEESTVGIALNLESKNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEGYLGRVVNALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVVCVYVAIGQKASSVAQVVTSLQERGAMEYTIIVAETANSPATLQYLAPYIGAALAEYFMYRERHTLIIYDDPSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSSDLFNAGIRPAINVGISVSRSPQFFPKTSLGSMHNILPNRYKFFKLRTPP 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04766 396 FunFam ATP synthase subunit alpha 1 94 - -
Vifa3g04766 396 ProSitePatterns ATP synthase alpha and beta subunits signature. 356 365 IPR020003 GO:0005524
Vifa3g04766 396 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 150 365 IPR000194 GO:0005524
Vifa3g04766 396 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 11 95 IPR036121 GO:0046034|GO:1902600
Vifa3g04766 396 FunFam ATP synthase subunit alpha 95 369 - -
Vifa3g04766 396 NCBIfam F0F1 ATP synthase subunit alpha 4 366 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vifa3g04766 396 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 367 IPR027417 -
Vifa3g04766 396 Pfam ATP synthase alpha/beta family, beta-barrel domain 29 93 IPR004100 GO:0046034|GO:1902600
Vifa3g04766 396 Gene3D - 3 94 IPR023366 -
Vifa3g04766 396 Hamap ATP synthase subunit alpha [atpA]. 2 395 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vifa3g04766 396 Gene3D - 95 369 IPR027417 -
Vifa3g04766 396 PANTHER ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL 2 366 IPR005294 GO:0015986|GO:0045261|GO:0046933
Vifa3g04766 396 CDD F1-ATPase_alpha_CD 95 366 IPR033732 GO:0032559
Vifa3g04766 396 CDD ATP-synt_F1_alpha_N 28 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04766 Vifa-Chr3 1373577970 1373579160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04766 87 366 Primary Pumps ATPases(2) AT4G38510 30.976 2.10e-31 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04766 K02111 - gmx:3989298 681.019