Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04763 ATGGCAAAATCTATACCAAAAATTGGTTCACGTAAAACTGGACGTATTGGTTCGCGTAAGCATCCTCGTAAAATACCAAAGGGGGTTATTTATATTCAAGCTAGTTTCAACAATACCATTGTGACTGTTACAGATGTAAGAGGTCGGGTGATTTCTTGGTCCTCCGCCGGTTCATGTGGATTCAAGGGTACACGAAGGGGGACACCATTTGCCGCTCTAACCGCAGCGGGAAATGCTATTCAAACAGTAGTCGATCAAGGCAAGCAACGAGCAGACGTCATGATAAAAGGTCCCGGTCTAGGAAGAGAGGCGGCATTAAGAGCTATTTCTGGAAGTCGGATACGAACACTACAGTGGAAGTGTGTTGAATCAAGGGTACACAGTAAGCGTCTTTATTATGGACGCTTTATTATGTCTCCACTTATGAAAGGTCAAGCAGATACAATAGGCATTGCAATGCGAAGAATTTTGCTCGGAGAAATAGAGGGAACATGTATCACACGTGCAAAATCTGAGAAAATACCACATGAATATTCTACCATAATAGGTATTCAAGAATCAATACATGAAATTTTAATGAATTTAAAAGAAGTTGTATTGAGAAGTAATCTGTATGGAACTCGGGACGCGTCTATTTGTTTCAAAGGTCCTGGATATGTAACTGCTCAAGACATCATTTTACCACCTTCGGTGGAAGTCATTGATAATACACAACATATAGCTAACCTAACAGAACCTATTAATTTGTGTATTGAATTAGAAATTGATAGAAAGCGGGGATATCGTATAAAAACACTAAACAACATTCAAGATGGAAGTTATACTATAGATGTTGTATTCATGCCTGTTAGAAATGCAAATCATAGTATTCATTCTTATGTGAATGGAAATGAAAAACAAGAGATACTAGTTCTCGAAATATGGACAAATGGAAGTTTAACTCCTAAGGAATCACTTTATGAAGCCTCCCGGAATTTGATTGATTTATTTATTCCTTTTTTACATGCAGAAGAAGAAAACTTAAATTTTGAAAACAATCAACACAAAATTACTTTGCCCCTTTTTACTTTTCATGATAGATTGGATATGATCGAGTCTGATCATAGAAAAGATTATCTTCAAGCGAACCGGACTATCCTCTGTAGAGGACTGACGCGGTGGTTGGAACAAAGACACATTTCATTGTGA 1188 0.3754 MAKSIPKIGSRKTGRIGSRKHPRKIPKGVIYIQASFNNTIVTVTDVRGRVISWSSAGSCGFKGTRRGTPFAALTAAGNAIQTVVDQGKQRADVMIKGPGLGREAALRAISGSRIRTLQWKCVESRVHSKRLYYGRFIMSPLMKGQADTIGIAMRRILLGEIEGTCITRAKSEKIPHEYSTIIGIQESIHEILMNLKEVVLRSNLYGTRDASICFKGPGYVTAQDIILPPSVEVIDNTQHIANLTEPINLCIELEIDRKRGYRIKTLNNIQDGSYTIDVVFMPVRNANHSIHSYVNGNEKQEILVLEIWTNGSLTPKESLYEASRNLIDLFIPFLHAEEENLNFENNQHKITLPLFTFHDRLDMIESDHRKDYLQANRTILCRGLTRWLEQRHISL 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04763 395 CDD RNAP_alpha_NTD 124 333 - -
Vifa3g04763 395 Pfam Ribosomal protein S11 28 114 IPR001971 GO:0003735|GO:0005840|GO:0006412
Vifa3g04763 395 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 139 329 IPR011263 GO:0003899|GO:0006351
Vifa3g04763 395 SMART rpoldneu2 133 336 IPR011263 GO:0003899|GO:0006351
Vifa3g04763 395 Pfam RNA polymerase Rpb3/RpoA insert domain 170 262 IPR011262 GO:0003899|GO:0006351|GO:0046983
Vifa3g04763 395 SUPERFAMILY RBP11-like subunits of RNA polymerase 117 335 IPR036603 GO:0006351|GO:0046983
Vifa3g04763 395 Gene3D - 133 327 IPR036603 GO:0006351|GO:0046983
Vifa3g04763 395 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 27 122 IPR001971 GO:0003735|GO:0005840|GO:0006412
Vifa3g04763 395 MobiDBLite consensus disorder prediction 1 21 - -
Vifa3g04763 395 SUPERFAMILY Translational machinery components 24 115 - -
Vifa3g04763 395 Gene3D - 163 280 IPR036643 -
Vifa3g04763 395 Hamap 30S ribosomal protein S11 [rpsK]. 11 138 IPR001971 GO:0003735|GO:0005840|GO:0006412
Vifa3g04763 395 FunFam DNA-directed RNA polymerase subunit alpha 163 280 - -
Vifa3g04763 395 Gene3D Ribosomal protein S11 12 130 IPR036967 GO:0003735|GO:0005840|GO:0006412
Vifa3g04763 395 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 163 281 IPR036643 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04763 Vifa-Chr3 1373564311 1373567143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04763 28 115 Cytoplasmic Ribosomal Protein Gene Family AT3G11510 34.021 1.03e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04763 K03040 - psom:113275326 533.487