Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04759 ATGTTCCTTAAGAGGCTTGCTTTAATAGGAGTTGGTGTCTCAGGTCTTTTGGGTTTTGCAACAACAGCATCTGCTGATGAAGCTGAGCATGGCCTCGCATCTCCACACTATCCATGGCCTCACGAGGGCATCCTCAGTTCATATGATCATGCTTCGATTCGTCGTGGTCATCAAGTTTATACACAAGTTTGTGATTCCTGCCATTCCATGTCTTTGATATCATACTGTGATTTGGTTGGTGTGGCTTACACAGAAGAAGAGGTAAAGGCCATGGCTGCTGAGATTGAGGTGGAAGATGGCCCTAATGATGAGGGTGAGATGTTTTCACGCCCTGGTAAACTCAGTGACCGCTTTCCTCAGCCATATGCAAATGAATCAGCTGCTAGGTTTGCTAATGGAGGGGCCTATCCTCCAGATCTAAGTCTTATTACCAAAGCTCGTCACAATGGTCAGAACTATGTGTTTTCCCTCCTAACCGGTTATCGTGACCCCCCTACTGGCGTTTCGATCAGAGAGGGATTGCATTACAATCCTTATTTTCCGGGTGGAGCCATTGCCACGCCTAAGATGCTTAATGATGGTGTTGTTGAATATGAAGATGGTACCCCTGCTACAGAAGCTCAGATGGGGAAAGATGTCGTGTCATTTTTGTCTTGGGCTGCAGAACCTGAGATGGAAGAGAGAAAACTGATGGGATTTAAATGGATATTTATACTTTCATTGGCATTACTTCAAGCTGCATATTATCGCCGTCTTCGATGGTCTGTTCTCAAGTCCCGCAAGTTGGTTCTTGATGTTGTCAAGTAG 807 0.4548 MFLKRLALIGVGVSGLLGFATTASADEAEHGLASPHYPWPHEGILSSYDHASIRRGHQVYTQVCDSCHSMSLISYCDLVGVAYTEEEVKAMAAEIEVEDGPNDEGEMFSRPGKLSDRFPQPYANESAARFANGGAYPPDLSLITKARHNGQNYVFSLLTGYRDPPTGVSIREGLHYNPYFPGGAIATPKMLNDGVVEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFILSLALLQAAYYRRLRWSVLKSRKLVLDVVK 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04759 268 ProSiteProfiles Cytochrome c family profile. 51 158 IPR009056 GO:0009055|GO:0020037
Vifa3g04759 268 FunFam Cytochrome c1, heme protein, mitochondrial 224 268 - -
Vifa3g04759 268 Gene3D - 224 268 - -
Vifa3g04759 268 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 223 267 IPR021157 -
Vifa3g04759 268 PRINTS Cytochrome C1 signature 37 56 IPR002326 GO:0009055|GO:0020037
Vifa3g04759 268 PRINTS Cytochrome C1 signature 173 184 IPR002326 GO:0009055|GO:0020037
Vifa3g04759 268 PRINTS Cytochrome C1 signature 204 223 IPR002326 GO:0009055|GO:0020037
Vifa3g04759 268 PRINTS Cytochrome C1 signature 223 238 IPR002326 GO:0009055|GO:0020037
Vifa3g04759 268 PRINTS Cytochrome C1 signature 102 122 IPR002326 GO:0009055|GO:0020037
Vifa3g04759 268 PRINTS Cytochrome C1 signature 135 159 IPR002326 GO:0009055|GO:0020037
Vifa3g04759 268 PRINTS Cytochrome C1 signature 57 76 IPR002326 GO:0009055|GO:0020037
Vifa3g04759 268 PRINTS Cytochrome C1 signature 184 203 IPR002326 GO:0009055|GO:0020037
Vifa3g04759 268 Pfam Cytochrome C1 family 39 255 IPR002326 GO:0009055|GO:0020037
Vifa3g04759 268 PANTHER CYTOCHROME C1 3 266 IPR002326 GO:0009055|GO:0020037
Vifa3g04759 268 Gene3D - 28 223 IPR036909 GO:0009055|GO:0020037
Vifa3g04759 268 SUPERFAMILY Cytochrome c 32 222 IPR036909 GO:0009055|GO:0020037
Vifa3g04759 268 FunFam Cytochrome c1, heme protein 28 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04759 Vifa-Chr3 1373546404 1373547290 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04759 3 268 Chloroplast and Mitochondria Gene Families AT3G27240 88.346 2.44e-163 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04759 K00413 - gmx:100777056 490.73