Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04758 ATGTCGTCTTCGGCGTTTGATGTACTGATGTCGGGAGCTCGGGATGTGGCTAAGAAGAAATCAGACCTGAAAAGAAAAACCCCACACTCTCACTCAGAGCCCTCCCCAAATCCTCCTAACCAAACCGAACCCCCAAACAAGTTTTGTAGCCGCCCATCCGCTCCCTCTTCTTCTTCCATAGAAGAACTGAGGGAACGGGTTTTATTTCTAAAGAAGAAGCCGTCGGAGTTTGATCCTACCTCAGTTGCTTGGTGGAAGAAGGGTGAATCCGTGCCGTTTCTGTTCCTCTGTTTAGCATTTGATTTGATCCAGCAAGAGAGTGGCAGAATTGTAATGACAGATATTGTTTGCAACCTTTTGAGGTGTGTCATTCACACTAGCCCTCAGGATCTCCTGCCCGTTGTTAATCTCGCTGCAAATAGGATTGCTCCACCACATGAAGGTTTGGAATTGGGCATCGGTGATGCTGCCATTATCAAGGCCCTTGCCGAGGGCTGTGGCAGGACTGAGAAGCACATTAACCAGCAGTATACGGTTTTAGGTGACTTGGGTTCAGTTGCCAAAGCTATCCGTTTGTCTCAATCTATGCTCCGGAAGCCCGATGCATTGACTATAACAAAAGTTTTCAACACCTTTCACTCAATTGTAAAGGAATCCGGAAAAGACAGCCGGGAGAAGAAAAAGAATCATATAAAGTCACTTCTTCTTGCTGCAACCGACTGCGAACCTTTATATCTAACCCGTTTGCTTCAGAAAGAGTTGCGCCTTGGATATGGTGAGCAAACTTTATTATCTGCATTGGGCCAAGCTGCCCTTTATTCTGAAGAACGTTCTGAACTTCCTCCTGAAATTCACTCTCCTTCAGAAGAGGCCGCAAAGATTGTTAAACAGGTATATTCTGTTCTCCCTGACTATGGCAAAATAGTACACTCGCTGCTTACTGATGGTATATGGCGACTTCCAACAACATGTGTTTTTACTGTTGGTGTTCCGGTTGAGCCTATGCTGTCAAAACCAATGACGAGTGTATCTGAAGCTCTAAATAAGTTCCAGGATGCAGGGTTTACCTGTGAATACAAATACGATGGAGAACGTGCTCAGATACATTACATGGATAATGGCTTGGTTGAGATTTATAGTAGGAATGCTCAACGGAACACCGAGAAATTTCCCGATGTTGTTGCTGCAGTTTCAAGGTTAAAGAAAGGAACTGTGTCGTCATTTGTTATTGATTGTGAATTGGTTGCATATGATCGTGCAAAACAGAAACTCCTTCCTTTCCAGGTGCTTAGTACCCGCTCCCGCAAAAATGTAGCTGCGAGTGGCATAAAGGTTGATGTATGCATATTTGCTTTTGATTTGTTGTTTCTTAATGGCCAAGCACTGCTTCAGGAAAATCTGAAAATTCGTAGAGAGCATCTTTATGCCTCATTTGAGGAGGATTCTGGATTTCTTCAGTTTGCAACGTCTCTAACATCAAATGATGCCGAGGAAATACAAAAGTTTCTTGACGAAGCCGTGGATGCTAGTTGTGAGGGGTTAATTTTTAAAACATTAAATAAACATGCTACATATCAACCTTCCCATAGATCTCGCAACTGGCTTAAACTGAAGAAAGATTATCTGAAAAATTTAGGGGACACACTAGATTTGGTTCCTATTGGTGCTTTCCATGGTCGTGGGCAACGTGCAGGAGTCTATGGTGCCTTTCTCCTTGCCTGCTATGACATCGATAATGAAGAATTTCAAACTATTTGTAAGACAGGAACTGGATTCTCGAGAGAATTGCTAGAAGAAAGTTCTACCAGACTCCGGTCAAAAATAATTCCCCAACCAAAAACGTACTATAGGCATGCAGAGAAAATCAAACCTGATGTCTGGTTTGAAGCCACTGAAGTGTGGGAGGTGAAAGCTGCAGACCTCACCATTAGCACTGTGTACCAAGCTGCAGTGGGCATAGTAGATTCAGATAAGGGCATATCTCTTAGATTTCCTCGTCTAATTCGATTTCGGGCGGACAAAGATCCTGATAAGGCCTCATCGTCCAAGCAGGTTGCCGAAATGTATAATGCTCAAAAAAATAATCACACCAACGAATCCAAGTCATCAGATGAAAATGATTAA 2124 0.4322 MSSSAFDVLMSGARDVAKKKSDLKRKTPHSHSEPSPNPPNQTEPPNKFCSRPSAPSSSSIEELRERVLFLKKKPSEFDPTSVAWWKKGESVPFLFLCLAFDLIQQESGRIVMTDIVCNLLRCVIHTSPQDLLPVVNLAANRIAPPHEGLELGIGDAAIIKALAEGCGRTEKHINQQYTVLGDLGSVAKAIRLSQSMLRKPDALTITKVFNTFHSIVKESGKDSREKKKNHIKSLLLAATDCEPLYLTRLLQKELRLGYGEQTLLSALGQAALYSEERSELPPEIHSPSEEAAKIVKQVYSVLPDYGKIVHSLLTDGIWRLPTTCVFTVGVPVEPMLSKPMTSVSEALNKFQDAGFTCEYKYDGERAQIHYMDNGLVEIYSRNAQRNTEKFPDVVAAVSRLKKGTVSSFVIDCELVAYDRAKQKLLPFQVLSTRSRKNVAASGIKVDVCIFAFDLLFLNGQALLQENLKIRREHLYASFEEDSGFLQFATSLTSNDAEEIQKFLDEAVDASCEGLIFKTLNKHATYQPSHRSRNWLKLKKDYLKNLGDTLDLVPIGAFHGRGQRAGVYGAFLLACYDIDNEEFQTICKTGTGFSRELLEESSTRLRSKIIPQPKTYYRHAEKIKPDVWFEATEVWEVKAADLTISTVYQAAVGIVDSDKGISLRFPRLIRFRADKDPDKASSSKQVAEMYNAQKNNHTNESKSSDEND 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04758 707 MobiDBLite consensus disorder prediction 16 59 - -
Vifa3g04758 707 ProSiteProfiles ATP-dependent DNA ligase family profile. 440 576 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vifa3g04758 707 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 358 366 IPR016059 GO:0003909
Vifa3g04758 707 Gene3D - 543 706 IPR012340 -
Vifa3g04758 707 Gene3D - 70 336 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vifa3g04758 707 Pfam ATP dependent DNA ligase domain 334 538 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vifa3g04758 707 SUPERFAMILY Nucleic acid-binding proteins 546 692 IPR012340 -
Vifa3g04758 707 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 75 324 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vifa3g04758 707 NCBIfam ATP-dependent DNA ligase 150 689 IPR000977 GO:0003910|GO:0005524|GO:0071897
Vifa3g04758 707 Gene3D DNA ligase/mRNA capping enzyme 363 488 - -
Vifa3g04758 707 MobiDBLite consensus disorder prediction 16 31 - -
Vifa3g04758 707 Gene3D - 344 542 - -
Vifa3g04758 707 Pfam ATP dependent DNA ligase C terminal region 563 674 IPR012309 GO:0003910|GO:0006281|GO:0006310
Vifa3g04758 707 MobiDBLite consensus disorder prediction 683 697 - -
Vifa3g04758 707 CDD Adenylation_DNA_ligase_I_Euk 323 541 - -
Vifa3g04758 707 MobiDBLite consensus disorder prediction 674 707 - -
Vifa3g04758 707 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 30 704 - -
Vifa3g04758 707 Pfam DNA ligase N terminus 92 267 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vifa3g04758 707 CDD OBF_DNA_ligase_I 546 691 - -
Vifa3g04758 707 FunFam DNA ligase 543 702 - -
Vifa3g04758 707 FunFam DNA ligase 70 336 - -
Vifa3g04758 707 FunFam DNA ligase 363 488 - -
Vifa3g04758 707 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 326 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04758 Vifa-Chr3 1373360073 1373367629 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04758 4 705 Core DNA Replication Machinery Family AT1G08130 61.194 0.0 929
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04758 K10747 - cave:132163569 964.14