Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04754 ATGGGTATCTGCATATCCGTTGCATCTTCAGAGATTCATGGAATCCCTCAAGTTCATGATGAGAATGTCATGATATTTGAAGCAAATAAGGTTCAACATGAGACTAAGAGACTTTGTTCTGTTTACTCTAAACAAGGTACTAAAGGTCTCAACCAAGATGCTGCATCTCTCTACCAGGATTATGGGATAGTAGATGGAACATTTTGTGGTGTTTATGATGGACATGGAAGGAATGGACATATAGTGAGCAAAATAGTAAACAATAGTTTACCATCTCTCATATTGAGCCAAAAGAATGCTATTGAGGAGAATGATACAACAAAAAATGGTGTTGACAATAAACAAAACAAATTTTCAAATAACTTTATAAAATGGAAAGAAGCTATTCTTGGTGCTTTCGATGGGATGGATAATGAGGTGAAACAACAAGAGAATCTAGATTGCTCTTGTAGTGGAACTGCTGCTGTAGTTGCCATAAGACATGGTAATGGTCTTGTCATAGCTAATTTGGGTGACTCAAGAGCAATCTTAGGGACAATTCATGATGATAAACTCAAAGCCATTCAATTGACTACAGATTTGAAACCTGGATTGCCTTGCGAAGCAAAGAGAATAAGAAGTTGCAACGGTTGTGTTTATGCGTTAAAGGAAGAATCACATGTCCAACGAGTATGGTTGCCAAACGAGAATTACCCTGGCCTAGCCATGTCTAGAGCTTTTGGAGATTTCATACTCAAAGATCATGGTGTTATTGCCATTCCAGATATTTGGTATCACCCTTTGGCATCAAATGACCAGTTTATTGTTCTTGCAAGTGATGGGGTGTGGGATGTACTAAGTAATGAAGAGGTTGCATCAATTGTGTGGATGGTGGAAAGTGAAGAGGAAGCAGCAAGGGCAGTGGTGGAAGCAGCTACAACTGCATGGGCTAAGAAGTATCCTTCCTCTAGGGTAGATGATTGCACTGTGGTTTGCCTTTTTCTGCAGAAGAGACCACAAAATTTGGGGTATATAGAAAGTGGAAAATTAGGTTAA 1035 0.3903 MGICISVASSEIHGIPQVHDENVMIFEANKVQHETKRLCSVYSKQGTKGLNQDAASLYQDYGIVDGTFCGVYDGHGRNGHIVSKIVNNSLPSLILSQKNAIEENDTTKNGVDNKQNKFSNNFIKWKEAILGAFDGMDNEVKQQENLDCSCSGTAAVVAIRHGNGLVIANLGDSRAILGTIHDDKLKAIQLTTDLKPGLPCEAKRIRSCNGCVYALKEESHVQRVWLPNENYPGLAMSRAFGDFILKDHGVIAIPDIWYHPLASNDQFIVLASDGVWDVLSNEEVASIVWMVESEEEAARAVVEAATTAWAKKYPSSRVDDCTVVCLFLQKRPQNLGYIESGKLG 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04754 344 ProSiteProfiles PPM-type phosphatase domain profile. 38 328 IPR001932 -
Vifa3g04754 344 Pfam Protein phosphatase 2C 66 305 IPR001932 -
Vifa3g04754 344 PANTHER PROTEIN PHOSPHATASE 39 326 IPR015655 GO:0004722|GO:0006470
Vifa3g04754 344 CDD PP2Cc 37 328 IPR001932 -
Vifa3g04754 344 SMART PP2C_4 29 326 IPR001932 -
Vifa3g04754 344 SUPERFAMILY PP2C-like 33 330 IPR036457 -
Vifa3g04754 344 Gene3D - 19 331 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04754 Vifa-Chr3 1372188056 1372189741 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04754 1 333 PP2C-type Phosphatase Gene Family AT5G26010 51.765 1.05e-102 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04754 - - aip:107605550 452.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04754 3 1372188056 1372189741 Vifa3g04754 3 1372188056 1372189741 ECH