Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04749 ATGGCTACGGAATATCCTGAGGCTAACAAGGTTGTCCAGTTTTTCATGATCATTACTGAAAATCGTCAACAAGGAGAGCTTGTAAAACCTTGTATGTTACCAATAAAGTTTGTGAGGAAACATGGACAAGGTTTACCAAATGTTATATGTCTAAAGACTTCCAATGGAGAAAACTGGAAAATAAATTTGGTGATGAATGATGGCAAAATATGGTTTGGACAAGGTTGGAAGGAATTTGCACAGTATTATTCTCTAGGTTATGGCCATCTTCTCGTTAAAACCTTCCAACCTAGAGAATATGGCCATAACCTAGAGAATAATACTGTGCAAATTCCTTCCAACCTTGTCCAAACCATATTTTGCCATCATTCATCACCAAATTTATTTTCCAGTTTTCTCCATTGGAAGTCTTTAGACATATAA 423 0.3593 MATEYPEANKVVQFFMIITENRQQGELVKPCMLPIKFVRKHGQGLPNVICLKTSNGENWKINLVMNDGKIWFGQGWKEFAQYYSLGYGHLLVKTFQPREYGHNLENNTVQIPSNLVQTIFCHHSSPNLFSSFLHWKSLDI 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04749 140 Pfam B3 DNA binding domain 32 92 IPR003340 GO:0003677
Vifa3g04749 140 ProSiteProfiles B3 DNA-binding domain profile. 33 108 IPR003340 GO:0003677
Vifa3g04749 140 SMART B3_2 23 103 IPR003340 GO:0003677
Vifa3g04749 140 Gene3D - 7 112 IPR015300 -
Vifa3g04749 140 SUPERFAMILY DNA-binding pseudobarrel domain 11 92 IPR015300 -
Vifa3g04749 140 PANTHER B3 DOMAIN-CONTAINING 10 95 - -
Vifa3g04749 140 CDD B3_DNA 32 92 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04749 Vifa-Chr3 1369274768 1369275270 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04749 29 96 B3 DNA Binding Superfamily AT3G18990 36.765 1.82e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa3g04749 B3 2.4e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04749 - - psat:127127876 129.028