Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04746 ATGGAGAATGATGTGTACAATGCTCAAATGAACATGACTGGTCAAATTTCATCTGTCATAGAAGATATCACACATCATCTAACTCAAAAGCCACTCATTCATCATTGCTATTCATTTGATCTTAACAACCAAAACATTATCAATGGAATTCCAATACTTTCTGGAGAACAAAATCAAGAACATCAACATGTAAGTAGTAATGGCCATGCTATTGATGGTGGTAGCACTAGCAGCTTCATGAATCATCAAACTATTGCTGATTCTACTTCATTTGTTTCATCACACCAAGGAAGGACTATTGTGGAAAATCCCTCAAATCCCTCGAATCTCATTGTTAACAATGATTTTCATGATAATTTAGAAGCTATGGTACCTTACATGTTCAATAATTGGCAAGATACTTCAAGTTCAAACCCTTTTGGTCAAAATAATAGCTATGTTAACAAGTATATGAAACCTCAAGAGGGTAATGATGGAACTGAATTCATGTCATATTCGACAATACCGAACATTGATCCAAATGGATGGCAACCATCAAATCTTGCTTATAGTTCATCTAATTGTAGCAATGAACTTTCACTAAGTCTTGCAACATCTCCGAATTCAGGTCAGTGTTCGGAGATTAGTTGCTCTGACTTGACTCATAGCATGAATGGAACTAGATCAGGGTTGGAACAAGCTTCTTGTAGTAGTATGGAGCTTTCTATGAGCTTAGGTAACGATAAACATGTTAAATTCTCGCCGGCGTTATTAGGATCGAGATACCTTGCTGTAATTCAGGAGATACTTGTTCAAATTGCAACTTATTCTTTTGAGAATCTAGATGAGATAAGTTACTCAGGTTCTGGTGTTAGAGGGCAAGGAAATAAATCAAGTTCGTCGAACACGACAAAAAGAAGGATAGGAATAAACCGAGATGCGAATTCTAAGTCGGAAGCGTATGCTGATTCTTCGCTGCAAAGACAGGCTGCTGAATCAAAGAAATCACAACTTCTGATGCTTCTACAGCTGGTGGATAATCAATATAGTCAATGTTTAGATGAGGTTCACACTGTTGTATCTGCATTTCATGCTGCTACTGAGCTGGATCCACATATCCATGCACATTTTGCTGTCAAAACGGTTTCTCGACTCTATAAGGATTTGAGAGAGCGGATAAGCAATCAAATTCTTGCCATGGGATCGAATTTCAATAGCTCGCGTTCGGAAGAGGACAAGGAATTGTCTTTGGAAACTTCATTCATTCAGAAGCAATGGGCTCTACAACAGCTGAAAAGGAAGGATCAGTTATGGAGACCTCAAAGGGGCTTGCCAGAAAGATCAGTTTCCGTTCTACGCGATTGGATGTTTCAGAATTTCCTCCATCCGTATCCTAAAGATGCAGAGAAGCATTTACTTGCGATAAAAAGTGGATTGACGAGAAGTCAGGTATCTAACTGGTTTATAAATGCGCGTGTTCGGCTATGGAAACCTTTGATTGAGGAAATGTATGCTGAAATGAATAGAAGAAAAGCTTGTAGAAATGAAGGAGAAAATGAGAGTAGTGAAAGAAGCAGGATAAGCATAAACAATCAAATGTTTAATATCAATTGA 1593 0.3798 MENDVYNAQMNMTGQISSVIEDITHHLTQKPLIHHCYSFDLNNQNIINGIPILSGEQNQEHQHVSSNGHAIDGGSTSSFMNHQTIADSTSFVSSHQGRTIVENPSNPSNLIVNNDFHDNLEAMVPYMFNNWQDTSSSNPFGQNNSYVNKYMKPQEGNDGTEFMSYSTIPNIDPNGWQPSNLAYSSSNCSNELSLSLATSPNSGQCSEISCSDLTHSMNGTRSGLEQASCSSMELSMSLGNDKHVKFSPALLGSRYLAVIQEILVQIATYSFENLDEISYSGSGVRGQGNKSSSSNTTKRRIGINRDANSKSEAYADSSLQRQAAESKKSQLLMLLQLVDNQYSQCLDEVHTVVSAFHAATELDPHIHAHFAVKTVSRLYKDLRERISNQILAMGSNFNSSRSEEDKELSLETSFIQKQWALQQLKRKDQLWRPQRGLPERSVSVLRDWMFQNFLHPYPKDAEKHLLAIKSGLTRSQVSNWFINARVRLWKPLIEEMYAEMNRRKACRNEGENESSERSRISINNQMFNIN 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04746 530 ProSiteProfiles 'Homeobox' domain profile. 428 491 IPR001356 GO:0003677
Vifa3g04746 530 SMART prehox3 244 388 IPR006563 -
Vifa3g04746 530 Pfam Associated with HOX 250 387 IPR006563 -
Vifa3g04746 530 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 173 514 - -
Vifa3g04746 530 Pfam Homeobox KN domain 448 487 IPR008422 GO:0003677|GO:0006355
Vifa3g04746 530 CDD homeodomain 431 491 IPR001356 GO:0003677
Vifa3g04746 530 SUPERFAMILY Homeodomain-like 433 500 IPR009057 -
Vifa3g04746 530 Gene3D - 426 506 - -
Vifa3g04746 530 MobiDBLite consensus disorder prediction 281 302 - -
Vifa3g04746 530 MobiDBLite consensus disorder prediction 281 307 - -
Vifa3g04746 530 MobiDBLite consensus disorder prediction 58 79 - -
Vifa3g04746 530 SMART HOX_1 431 495 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04746 Vifa-Chr3 1367573450 1367575422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04746 190 504 Homeobox Transcription Factor Family AT4G32980 58.125 5.33e-109 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vifa3g04746 POX 2.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04746 - - gmx:100812648 629.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04746 3 1367573450 1367575422 Vifa3g04746 3 1367573450 1367575422 ECH