Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04744 ATGAAGTGGTCCATGTCTGCAACACAATTTGTAAACTTAAAGATCAACAAGTCTAGAAATCAAAGTTTTGGGTACATAGTGGACAGAATCAGAGATAAACTCCAAAGTTGGAAGGAAAAGACTCTATCCTATGCTGGCATAGTAACTCTTATAAAATCTATTGCTCAAGCTATTCCAAAGTCATTGGTTCTTATTATTGCAATATCCATCACCATTGGAACACTCTACCTTGTTTTTAGGCCAAAGCTTCCTAAATACTCAGTAGACAGATTGAGAATAACACAGTTCAATCTGTCTGATAATAACAATCTTTTTGTTACCTTCGATGTAACAGTAACTGCTAGAAATCCAAACAAGAAGATTGGAATATATTATGGTCATCGGAATATAACCGTGCTTAATCTACCTTTAACGGGTCAAACACAAGATGAAACTGGTTTAGTAAATACTTTGCAGCAGCAGCTGCAAGAGAAAGTTTCTCAACAATACTTCCAGAAAAAGGAAGAAGAGAAAACTATACTGCCCCAAATTTCTAAGGTGCTTTCAACTCAAGATGCCTCGGGTAATGGAGAATATGAAACTTCAGGATCTAGTGGGTATGGTACTGGTAGTGCTGCTGGGCTTACAAGAATTATGGTGGCAAAGTCAACAGAGTTTTCATATCAAGAACTAGCTAAGGCTACAAATAACTTTAGTTTGGATAATAAAATTGGTCAAGGTGGATTCAGAGCTGTCTATTATGCCGAACTCCGAGGCGAGAAAACAGCAATTAAGAAAATGAATGTACAAGCATCAACAAAATTTCTTTGTGAGTTAAAGGTCTTAACACATGTTCATCATTTGAATCTGGTGAGGTTGATTGGATATTGTGTTGAGGGATCGCTTTTCCTTGTATACGAACATATTGACAATGGAAACTTGGGTCAATATTTGCATGGTTTAGGTAAAGAGCCATTACCATGGTCTAGTAGAGTCCAAATTGCTCTAGATTCTGCAAGAGGCCTTGAATACATTCATGAACACACTGTGCCAGTTTATATCCATCGCGATGTAAAATCAGCAAACATATTGGTAGACAAAAACTTGTGGGGAAAGGTTGCAGATTTTGGCTTGACCAAACTTATTGAAGTTGGAAACTCCACACTTCACACTCGTCTTGTTGGAACTACATCTTACAAACAAACAAACATCTTACAGACAACAATTCTAACAAACAAACATCATCTTACAGCGACATTCGAAGGTGATGCAACGGAGGAGGCTGCTGGTGTTGGTGATTGTGCCGTTGATGCGAGGCGGAGGGTAATGGTTAGAGGACGACGAAGGGATGAAGGATGGAGACGGTTGACAATTGATGGTGGTGGTTGGTAA 1371 0.3866 MKWSMSATQFVNLKINKSRNQSFGYIVDRIRDKLQSWKEKTLSYAGIVTLIKSIAQAIPKSLVLIIAISITIGTLYLVFRPKLPKYSVDRLRITQFNLSDNNNLFVTFDVTVTARNPNKKIGIYYGHRNITVLNLPLTGQTQDETGLVNTLQQQLQEKVSQQYFQKKEEEKTILPQISKVLSTQDASGNGEYETSGSSGYGTGSAAGLTRIMVAKSTEFSYQELAKATNNFSLDNKIGQGGFRAVYYAELRGEKTAIKKMNVQASTKFLCELKVLTHVHHLNLVRLIGYCVEGSLFLVYEHIDNGNLGQYLHGLGKEPLPWSSRVQIALDSARGLEYIHEHTVPVYIHRDVKSANILVDKNLWGKVADFGLTKLIEVGNSTLHTRLVGTTSYKQTNILQTTILTNKHHLTATFEGDATEEAAGVGDCAVDARRRVMVRGRRRDEGWRRLTIDGGGW 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04744 456 Gene3D Phosphorylase Kinase; domain 1 211 301 - -
Vifa3g04744 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 346 358 IPR008271 GO:0004672|GO:0006468
Vifa3g04744 456 Pfam Protein tyrosine and serine/threonine kinase 232 377 IPR001245 GO:0004672|GO:0006468
Vifa3g04744 456 SUPERFAMILY Protein kinase-like (PK-like) 212 393 IPR011009 -
Vifa3g04744 456 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 165 406 IPR044812 GO:0019199|GO:0045087
Vifa3g04744 456 SMART serkin_6 231 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04744 456 FunFam LysM receptor kinase 2 210 301 - -
Vifa3g04744 456 Gene3D Transferase(Phosphotransferase) domain 1 302 413 - -
Vifa3g04744 456 ProSiteProfiles Protein kinase domain profile. 231 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04744 Vifa-Chr3 1367497063 1367500132 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04744 181 392 Receptor kinase-like Gene Family AT3G21630 68.396 1.34e-93 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vifa3g04744 PK_Tyr_Ser-Thr 2.9e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04744 - K13429 tpra:123921801 381.333