Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04731 ATGCCGAAAATGAAGCATCTACTCAGAAAGCTTCACATCGGTGGTGGCGCTGCCACAATCAATAATCATAATCCAAACGCAGCATTGCAGCTTTCTCATTCTGATTCTCACACTACTACGGCGCCTCTTCCTTCTTCGTCTTCTTCTCTGTCTCCGTCTCCTTCTCCTTCACCGTCTCCCTCTCCGACAGTTGTGCAGAACCCTCCGAACGACGTCGTCATCGACCGAGGTGTTGCGGATTTCAATCTTTTGCAGGAGGAAGAGTTTCAGGTTCAATTGGCGCTTGCGATTAGCGCTTCGGATTCCGATCCTCATGATGTTGATGAATCTGCTCAGATCGATGCTGCTAAACAGATCAGCCTGGGATATTCTGCTGCGCTTACTGATACTCCCGCGCTTGTTCAGTTTCAATCGCTGCGTTATTGGAATTACAATGTCATTGCTTATGACGAGAAAGTGATGGATGGGTTTTATGATGTCTATGGGATCGACTCAAGTTTAATTGAACGGGGAAAGATGCCATTGTTGGTGGATCTGAAAACCGTGCCCACCTCACGAAATGTTGATTATGAAGTAATCTCGGTGAACCGCATTGTCGATGTTGAGCTAAGTCAGCTTGAGAAAAAAGCCTGCACCTTGTTTGAAGAGTGTTCTGTTTCTGAACTAGGATTGTTTTTGAGTGGCTTAATTCAGAGACTTGCTGATGTTGTTGTTAGTAGAATGGGTGGACCGGTTAGTAATGCTGATCAAATTATGGAAAAGTGGACTATGAAGAGTCGTGAATTGCGAGATTCTTTAAGAACTGTAGTCCTTCCTCTTGGTTGTTTAGATGTTGGACTTTCACGTCACCGTGCCCTACTTTTTAAGGTACTTGCTGATAGGATTAATATTCCCTGCATGCTTGTAAAAGGGAGCTATTACACAGGAACTGATGATGGGGCTGTGAACTTGATTAAAGCTGATGATGGAAGTGAATACATTATTGATATGATGGGTGCTCCTGGTACTCTCATACCTGCTGAGGTGCCCAGCAGTCAAATCCAAAACTATGGCTTTGCTGGTAGGGGTTTTACAGAGATTGCAGAGCAGCCTAACAACATATACCAAATGCTTGGTAACGAAACTGGTGTGCTGGGAGTATTGTCTGATTGTAATGTAGGGAGGGTCCAGACAAAAGGATTAGTAGAAATCGGCAGTCAAACAAAGCCAGATGAAATGAATCATGTTAAGGTAAATGAAGCAGGGAGATTTGAGCATACAGAAGCATATGAATGCTCATCACACTCAGAGTCATCACATGCTGAAAACATGCATGTAAAAAATGTCTCCAAGTACGTTCTCAGTGCCGCAAAGAACCCAGAGTTTGCCTCAAAACTGCACACCATTCTTTTAGAAAGCGGTGCATCACCTCCTTCTGATCTTTTTTCAAATATGAATTCCAGAGATAGGGGTTTAGATACTGTTCAAGCTGATCCAAATCGGCTGTTATTATTAAGTTATGATACGTCTCTCACACTCCCTCAAGGAGTGGGCTCTGCTGGTAATACTAGGTTATGTCAATCGGCTGGCCAGTTAGCCAAAAAGCCAAAGGAATTCCGGACAGATGCCAATGAATTTTATGATTCTTCTCAGATTAGTAGTACAAGGAATCCTTTTGCAACTGTTTCTGGTAAAGATGGTGATATACAACAATCTAATCCATTAATTGTTGACTTTGCTTCTCTTAATACATGCAACACATGTAAAGATAAGTGTCCCGAGTCTTCCTTGCCCAAGGCAGTATTTTCTTGCAAAAGGCACAATGGCGTTGAATGTTTTTGTGACAATGATGAAAGTGGTCCTAGTAATGAAGCTGGAGCTTCTCTGAATAACATTGAACTTGGGACTGATTCAGTCATTCAAACAAACGAGACAGTTGATGGAGATTGTATCCTACATGATGATGGTAAAAGCAAGAAAGTTCACCCAATACTTGGTGAAGACACACAATGGGAAATTCAATGGGAGGATCTTCGTATCGGCGAGCGTATTGGTATTGGTTCTTATGGTGAAGTTTACCGTGCTGATTGCAATGGCACTGAAGTTGCTGTAAAGAAGTTTCTAGACCAAGATGTCTCTGGTGATGCACTAGATCAGTTCAAATCGGAAATTGAGATTATGCTAAGGCTGCGCCATCCTAATGTTGTGCTCTTCATGGGAGCAATTACTCGTCCGCCACATTTCTCTATCTTGACCGAGTTTCTTCCTAGAGGCAGTTTATATGGGCTATTGCATCGTCCCAAACTTGTACTTGATGAGAAGAGACGGTTGCGTATGGCTCTTGACGTGGCGAAGGGAATGAATTACTTGCACACCAGCCATCCTCCTGTTGTCCATCGAGATTTGAAGTCTCCAAACCTTCTTGTTGACCGGCATTGGGTTGTAAAGGTCTGTGATTTTGGTCTGTCACGTATGAAGCACCATACATATTTGTCATCGAAGTCGTGTGCTGGAACGCCTGAGTGGATGGCGCCAGAAGTTTTACGGAATGAGAATGCCAATGAGAAGTGTGATGTGTATAGTTTTGGTGTGATTTTGTGGGAGTTAACTACAACGCAAATCCCATGGCACGGTTTGAACCCAATGCAGGTTGTTGGAGCTGTTGGATTCCAAAATAAACGTCTTGAAATTCCAGAAGATATGGATCCAGTGGTAGCTCAAATAATACGTGACTGTTGGCAAAGGGAGCCACACTTGCGGCCATCCTTCTCACAGCTGATGTCTCGTCTTTACCGTCTTCGTCAATTGGTTGCCCGTAAGACGAGCTCTACTCAATAA 2817 0.4341 MPKMKHLLRKLHIGGGAATINNHNPNAALQLSHSDSHTTTAPLPSSSSSLSPSPSPSPSPSPTVVQNPPNDVVIDRGVADFNLLQEEEFQVQLALAISASDSDPHDVDESAQIDAAKQISLGYSAALTDTPALVQFQSLRYWNYNVIAYDEKVMDGFYDVYGIDSSLIERGKMPLLVDLKTVPTSRNVDYEVISVNRIVDVELSQLEKKACTLFEECSVSELGLFLSGLIQRLADVVVSRMGGPVSNADQIMEKWTMKSRELRDSLRTVVLPLGCLDVGLSRHRALLFKVLADRINIPCMLVKGSYYTGTDDGAVNLIKADDGSEYIIDMMGAPGTLIPAEVPSSQIQNYGFAGRGFTEIAEQPNNIYQMLGNETGVLGVLSDCNVGRVQTKGLVEIGSQTKPDEMNHVKVNEAGRFEHTEAYECSSHSESSHAENMHVKNVSKYVLSAAKNPEFASKLHTILLESGASPPSDLFSNMNSRDRGLDTVQADPNRLLLLSYDTSLTLPQGVGSAGNTRLCQSAGQLAKKPKEFRTDANEFYDSSQISSTRNPFATVSGKDGDIQQSNPLIVDFASLNTCNTCKDKCPESSLPKAVFSCKRHNGVECFCDNDESGPSNEAGASLNNIELGTDSVIQTNETVDGDCILHDDGKSKKVHPILGEDTQWEIQWEDLRIGERIGIGSYGEVYRADCNGTEVAVKKFLDQDVSGDALDQFKSEIEIMLRLRHPNVVLFMGAITRPPHFSILTEFLPRGSLYGLLHRPKLVLDEKRRLRMALDVAKGMNYLHTSHPPVVHRDLKSPNLLVDRHWVVKVCDFGLSRMKHHTYLSSKSCAGTPEWMAPEVLRNENANEKCDVYSFGVILWELTTTQIPWHGLNPMQVVGAVGFQNKRLEIPEDMDPVVAQIIRDCWQREPHLRPSFSQLMSRLYRLRQLVARKTSSTQ 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04731 938 Pfam Protein tyrosine and serine/threonine kinase 671 923 IPR001245 GO:0004672|GO:0006468
Vifa3g04731 938 MobiDBLite consensus disorder prediction 27 71 - -
Vifa3g04731 938 ProSiteProfiles Protein kinase domain profile. 671 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04731 938 Gene3D Phosphorylase Kinase; domain 1 664 748 - -
Vifa3g04731 938 FunFam Serine/threonine-protein kinase isoform 1 661 749 - -
Vifa3g04731 938 Pfam Ethylene-responsive protein kinase Le-CTR1 135 338 - -
Vifa3g04731 938 CDD STKc_MAP3K-like 677 923 - -
Vifa3g04731 938 PRINTS Tyrosine kinase catalytic domain signature 745 758 IPR001245 GO:0004672|GO:0006468
Vifa3g04731 938 PRINTS Tyrosine kinase catalytic domain signature 831 841 IPR001245 GO:0004672|GO:0006468
Vifa3g04731 938 PRINTS Tyrosine kinase catalytic domain signature 894 916 IPR001245 GO:0004672|GO:0006468
Vifa3g04731 938 PRINTS Tyrosine kinase catalytic domain signature 850 872 IPR001245 GO:0004672|GO:0006468
Vifa3g04731 938 PRINTS Tyrosine kinase catalytic domain signature 784 802 IPR001245 GO:0004672|GO:0006468
Vifa3g04731 938 ProSitePatterns Protein kinases ATP-binding region signature. 677 699 IPR017441 GO:0005524
Vifa3g04731 938 Gene3D Transferase(Phosphotransferase) domain 1 750 935 - -
Vifa3g04731 938 ProSitePatterns Serine/Threonine protein kinases active-site signature. 790 802 IPR008271 GO:0004672|GO:0006468
Vifa3g04731 938 SMART serkin_6 671 930 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04731 938 SUPERFAMILY Protein kinase-like (PK-like) 661 924 IPR011009 -
Vifa3g04731 938 MobiDBLite consensus disorder prediction 49 65 - -
Vifa3g04731 938 FunFam PAS domain-containing protein tyrosine kinase family protein 749 938 - -
Vifa3g04731 938 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 125 935 - -
Vifa3g04731 938 MobiDBLite consensus disorder prediction 27 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04731 Vifa-Chr3 1362848877 1362857654 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04731 619 929 MAP Kinase Kinase Kinase AT5G11850 78.025 9.85e-170 515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vifa3g04731 PK_Tyr_Ser-Thr 1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04731 K04424 - gmx:100779137 1333.55