Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa3g04728 | ATGACTCCTCTAACTCCGAATCCACCAGGTCCTAAGTCCTTGCTACAAGGTCAAAACCAATCCTTCGATGTTTCTCCTGTTAAACAGGACTGTCCTGTCTTGTTTAATTTTCTTGATCAGTTTCAGGAAAATCATGATCCTAAGGAACATAAGCTGGTATCTCATTATGGTGGATCATCATCATCAACCAATCATCAACAACCCTACAATTCATCGAGTGATTCAGCTATGGTTGATCAAAGCATTGCGCGTGACACAAATTTATCATCATCCATGGAGGTGGAAGATAGCAGCAAAAGAAATGATCCATTGGAAGAGAAATGGAAGTCTTCAAAGATGAGGTTGATGAAAATATTGATGATACCACAAAGCAGTTATGGTGCAGCCACAAATGAAGACAAAGCAATTATCAATACAACTGCTAGTGATGCCACAACTCCATCAAATGGAGGAATTCAAAATGATATGTACAACCAAGGAAGCCCTACTGCTAGGGTTTGTGTTGAATGTCAAGCTACCTCTACCCCACTTTGGAGGAGTGGCCCTAAGGGTCCTAAGTCACTTTGCAATGCTTGTGGAATTAGACAAAGGAAGGCAAGAAGGGCTGTGGCAGAAGCTGGAAGTAGTTGGGTGACTTCCACAAAGATGAGAGGACTTGAGAATGAAAAAGAAAAGAAACTTGTTGTGAACAAATGTACACAATTCAAGAAGAAGAATAAGAATACTTCAACTTCACCTACTGCTGCTACTACGACTACTACGGGTAGTAGCTCATCTGATGAGATGACGGAGAGACTTAATTTTTTCTTATTAAAGGTGAGAAAAAAATCGGGTTACGAGGATACTACTGAGGAAGTAGCTGATACGGCATTACTTCTAATGGATATATCTTCTGGTTATGTTTACCCTTAA | 912 | 0.4013 | MTPLTPNPPGPKSLLQGQNQSFDVSPVKQDCPVLFNFLDQFQENHDPKEHKLVSHYGGSSSSTNHQQPYNSSSDSAMVDQSIARDTNLSSSMEVEDSSKRNDPLEEKWKSSKMRLMKILMIPQSSYGAATNEDKAIINTTASDATTPSNGGIQNDMYNQGSPTARVCVECQATSTPLWRSGPKGPKSLCNACGIRQRKARRAVAEAGSSWVTSTKMRGLENEKEKKLVVNKCTQFKKKNKNTSTSPTAATTTTTGSSSSDEMTERLNFFLLKVRKKSGYEDTTEEVADTALLLMDISSGYVYP | 303 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa3g04728 | 303 | MobiDBLite | consensus disorder prediction | 50 | 106 | - | - | |
Vifa3g04728 | 303 | CDD | ZnF_GATA | 166 | 198 | IPR000679 | GO:0006355|GO:0043565 | |
Vifa3g04728 | 303 | SMART | GATA_3 | 161 | 226 | IPR000679 | GO:0006355|GO:0043565 | |
Vifa3g04728 | 303 | MobiDBLite | consensus disorder prediction | 238 | 259 | - | - | |
Vifa3g04728 | 303 | MobiDBLite | consensus disorder prediction | 55 | 94 | - | - | |
Vifa3g04728 | 303 | Gene3D | - | 161 | 205 | IPR013088 | GO:0006355|GO:0008270 | |
Vifa3g04728 | 303 | Pfam | GATA zinc finger | 167 | 200 | IPR000679 | GO:0006355|GO:0043565 | |
Vifa3g04728 | 303 | MobiDBLite | consensus disorder prediction | 11 | 25 | - | - | |
Vifa3g04728 | 303 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 160 | 200 | - | - | |
Vifa3g04728 | 303 | ProSitePatterns | GATA-type zinc finger domain. | 167 | 192 | IPR000679 | GO:0006355|GO:0043565 | |
Vifa3g04728 | 303 | PANTHER | GATA TRANSCRIPTION FACTOR 22-RELATED | 40 | 301 | - | - | |
Vifa3g04728 | 303 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Vifa3g04728 | 303 | ProSiteProfiles | GATA-type zinc finger domain profile. | 161 | 197 | IPR000679 | GO:0006355|GO:0043565 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa3g04728 | Vifa-Chr3 | 1361154253 | 1361155777 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa3g04728 | 107 | 302 | C2C2-Gata Transcription Factor Family | AT4G26150 | 33.803 | 2.63e-17 | 79.3 |