Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04728 ATGACTCCTCTAACTCCGAATCCACCAGGTCCTAAGTCCTTGCTACAAGGTCAAAACCAATCCTTCGATGTTTCTCCTGTTAAACAGGACTGTCCTGTCTTGTTTAATTTTCTTGATCAGTTTCAGGAAAATCATGATCCTAAGGAACATAAGCTGGTATCTCATTATGGTGGATCATCATCATCAACCAATCATCAACAACCCTACAATTCATCGAGTGATTCAGCTATGGTTGATCAAAGCATTGCGCGTGACACAAATTTATCATCATCCATGGAGGTGGAAGATAGCAGCAAAAGAAATGATCCATTGGAAGAGAAATGGAAGTCTTCAAAGATGAGGTTGATGAAAATATTGATGATACCACAAAGCAGTTATGGTGCAGCCACAAATGAAGACAAAGCAATTATCAATACAACTGCTAGTGATGCCACAACTCCATCAAATGGAGGAATTCAAAATGATATGTACAACCAAGGAAGCCCTACTGCTAGGGTTTGTGTTGAATGTCAAGCTACCTCTACCCCACTTTGGAGGAGTGGCCCTAAGGGTCCTAAGTCACTTTGCAATGCTTGTGGAATTAGACAAAGGAAGGCAAGAAGGGCTGTGGCAGAAGCTGGAAGTAGTTGGGTGACTTCCACAAAGATGAGAGGACTTGAGAATGAAAAAGAAAAGAAACTTGTTGTGAACAAATGTACACAATTCAAGAAGAAGAATAAGAATACTTCAACTTCACCTACTGCTGCTACTACGACTACTACGGGTAGTAGCTCATCTGATGAGATGACGGAGAGACTTAATTTTTTCTTATTAAAGGTGAGAAAAAAATCGGGTTACGAGGATACTACTGAGGAAGTAGCTGATACGGCATTACTTCTAATGGATATATCTTCTGGTTATGTTTACCCTTAA 912 0.4013 MTPLTPNPPGPKSLLQGQNQSFDVSPVKQDCPVLFNFLDQFQENHDPKEHKLVSHYGGSSSSTNHQQPYNSSSDSAMVDQSIARDTNLSSSMEVEDSSKRNDPLEEKWKSSKMRLMKILMIPQSSYGAATNEDKAIINTTASDATTPSNGGIQNDMYNQGSPTARVCVECQATSTPLWRSGPKGPKSLCNACGIRQRKARRAVAEAGSSWVTSTKMRGLENEKEKKLVVNKCTQFKKKNKNTSTSPTAATTTTTGSSSSDEMTERLNFFLLKVRKKSGYEDTTEEVADTALLLMDISSGYVYP 303
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04728 303 MobiDBLite consensus disorder prediction 50 106 - -
Vifa3g04728 303 CDD ZnF_GATA 166 198 IPR000679 GO:0006355|GO:0043565
Vifa3g04728 303 SMART GATA_3 161 226 IPR000679 GO:0006355|GO:0043565
Vifa3g04728 303 MobiDBLite consensus disorder prediction 238 259 - -
Vifa3g04728 303 MobiDBLite consensus disorder prediction 55 94 - -
Vifa3g04728 303 Gene3D - 161 205 IPR013088 GO:0006355|GO:0008270
Vifa3g04728 303 Pfam GATA zinc finger 167 200 IPR000679 GO:0006355|GO:0043565
Vifa3g04728 303 MobiDBLite consensus disorder prediction 11 25 - -
Vifa3g04728 303 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 160 200 - -
Vifa3g04728 303 ProSitePatterns GATA-type zinc finger domain. 167 192 IPR000679 GO:0006355|GO:0043565
Vifa3g04728 303 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 40 301 - -
Vifa3g04728 303 MobiDBLite consensus disorder prediction 1 25 - -
Vifa3g04728 303 ProSiteProfiles GATA-type zinc finger domain profile. 161 197 IPR000679 GO:0006355|GO:0043565
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vifa3g04728 Vifa-Chr3 1361154253 1361155777 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04728 107 302 C2C2-Gata Transcription Factor Family AT4G26150 33.803 2.63e-17 79.3
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vifa3g04728 GATA 8.6e-16 CL0167