Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04717 ATGATGAAAGGTTTGTCCGTAGATGAAAATATGTCAAATTTGACATCTGCTTCTAGTGAAAAAAGTGCTTCTTCGGCAACCAAGAATGAAAAGGCAAATCTAGAACCACAAACCAAAAGGAAGAGAAATCTTCCAGGCCACCCAGACCCTGAGGCAGAAGTAATAGCCTTGAGTCCCCAAACTCTGTTGGCAACAAACAGGTTCATTTGTGAGATTTGTAACAAAGGTTTTCAAAGAGATCAAAATCTTCAGCTTCATAAAAGAGGACATAATTTGCCATGGAAGCTAAAGAAAAGAAACAGCTATGAAGTCATAAGAAAGAAAGTGTATGTGTGTCCAGAGGCAGCATGTGTTCATCATGACCCTTCAAGGGCATTAGGAGACCTCACTGGAATCAAGAAACACTTTTTCAGAAAGCATGGTGAGAAGAAATGGAAATGTGAAAAGTGTTCCAAACGTTATGCAGTTCAATCTGATTGGAAAGCTCATTCAAAAATTTGTGGCACTAAAGAGTATAAGTGTGAATGTGGAACCCTTTTCTCAAGAAGGGACAGTTTTATAACTCACAGAGCTTTCTGTGATGTTCTATCACATGAGAGTGCTATGTCAATGTCAGCAGTGAACCCTCTATTCTCTCATCACTCACAGTTTCATAGCCATGGTTTTCAACCACCATCACTAAAAAAAGAACAAGACTTCAACTCAAGATCTTCAGAAATACCATCATGGTTATTCCAAACTCATATGAACCATTATGAACAAAACCCTAACCCTACAAATCTATTTCCTTCAAATTTCAACTCCAATAATATAATCACTACTTCTTCTCCACACATGTCAGCCACTAGTATACTGCAAAAAGCATCACAAATAGGTGTAACAGTAAGCAACACTGATCAAGAACATTGTAGGCCCTCCTCCCAGTTAATGCAAACTCACGTGCCTTTTGAATATAAGACACTGTATATGAATTCATCTTCACCTGTTTCTGGAATAGTTATGCCTTCACGTGAAGAAATAGCGACTGGTTTTTCTCATTGTTTGGCTCCATATGGGAATAAAGCTGCAATAGCCTCTGAATGCTTTGAACAAGGTGTCACTGTTACTGCTACAAATACAGAAGAATCTTCTCTTTTGCATGATGTGATATATGGTAATGAAAGTTCACAATTTGAAGGTGTTGTTGCTAATAATAACTTTGAGGAATTTGTTTCCAAATCAACACAAACACAATATTCCCAATTTGGTAAAAGCAACAATGATGATGAAATGACAAGGGACTTTTTGAGTCTTGGTGCATTTTCACAAAGAGATTTGTTCAATATATCTGGAATGAATGATGATCCTTTGGGTTCTTTATCTTATGGTAAGCAAAATCATAATCAAAATCCTTGGAGAGGCTAA 1404 0.3718 MMKGLSVDENMSNLTSASSEKSASSATKNEKANLEPQTKRKRNLPGHPDPEAEVIALSPQTLLATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKKRNSYEVIRKKVYVCPEAACVHHDPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTKEYKCECGTLFSRRDSFITHRAFCDVLSHESAMSMSAVNPLFSHHSQFHSHGFQPPSLKKEQDFNSRSSEIPSWLFQTHMNHYEQNPNPTNLFPSNFNSNNIITTSSPHMSATSILQKASQIGVTVSNTDQEHCRPSSQLMQTHVPFEYKTLYMNSSSPVSGIVMPSREEIATGFSHCLAPYGNKAAIASECFEQGVTVTATNTEESSLLHDVIYGNESSQFEGVVANNNFEEFVSKSTQTQYSQFGKSNNDDEMTRDFLSLGAFSQRDLFNISGMNDDPLGSLSYGKQNHNQNPWRG 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04717 467 SMART c2h2final6 110 140 IPR013087 -
Vifa3g04717 467 SMART c2h2final6 68 90 IPR013087 -
Vifa3g04717 467 SMART c2h2final6 145 165 IPR013087 -
Vifa3g04717 467 Pfam Zinc-finger double-stranded RNA-binding 68 90 IPR022755 -
Vifa3g04717 467 MobiDBLite consensus disorder prediction 1 51 - -
Vifa3g04717 467 MobiDBLite consensus disorder prediction 33 48 - -
Vifa3g04717 467 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Vifa3g04717 467 FunFam protein indeterminate-domain 12-like 47 116 - -
Vifa3g04717 467 MobiDBLite consensus disorder prediction 8 32 - -
Vifa3g04717 467 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 439 IPR031140 -
Vifa3g04717 467 SUPERFAMILY beta-beta-alpha zinc fingers 67 165 IPR036236 -
Vifa3g04717 467 Gene3D Classic Zinc Finger 123 206 - -
Vifa3g04717 467 Gene3D Classic Zinc Finger 47 116 - -
Vifa3g04717 467 FunFam protein indeterminate-domain 5, chloroplastic-like 123 202 - -
Vifa3g04717 467 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04717 Vifa-Chr3 1357887937 1357890392 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04717 7 298 IDZ Gene Family AT1G55110 58.841 1.38e-118 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa3g04717 zf-C2H2_jaz 4.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04717 K25870 - qsu:112016383 439.884