Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04715 ATGAATTCTGTCTCCCTCCATAACACTCTCCACTTCCACTTCCACCACCCCTTCGTCTCTTCCAAACCCACCCCTTCCTTCCTCTTCCTCAAAACAAAACCCCAAACCCATACACAATGCTGCACCACCACCACCACCACCACCACCACCACCAACAGCAACATCGTCGACATCGACATGGTCAAAACCAAACAAGGAACCTACGTACCAAAACAGAACAAAGTCGTTGTCCTCTGGGACCTGGACAACAAACCCCCACGCGGTCCACCTTACGACGCCGCACTCTCTCTCAAAACCCTCGCCGAACGCTTCGGCGAACTCACCGACATCTCCGCTTACGCCAACCGTCACGCCTTCATCCACCTCCCGCAATGGGTCCTCGACCAACGCCGTGAACGCAAACATCTTGACATCCTCGAACGCAAGGGAGTCGTCAACCCCTCCGAGCCTTACCTATGTTCCGTCTGCGGTCGGAAATGCAAAACCAACGTGGATCTTAAGAAACACTTCAAACAGCTTCACCAACGAGAGCGGCAAAAGAAGCTGAACCGTTTGAGTTCCTTGAAAGGGAAGAAGAGACAGAAGTTTAAGGAACGCTTTATTAGTGGGGACCAGAAGTATAACGATGCGGTTAGAGAGATTGTTAAGCCGAAAGTTGGGTATGGTCTTGCGTCCGAGTTGCGGCGGGCGGGGGTTTTTGTCAAGACTGTGGAGGATAAGCCTCAGGCGGCTGATTGGGCTTTGAAGAAACAGATGATGCATTCTATGAATAGAGGGATTGATTGGTTGTTTTTGGTTTCGGATGATTCGGATTTTAGCGACATGTTGCGCAAGGCTAGAGAGGCGAATTTAGGGACTGTTGTTGTTGGGGATGTTGATAGAGCTTTGGGGAGACATGCTGATTTGTGGGTTCCTTGGAATGCGGTTGAGAATGGAGAGGTTTTGGAGATGGATTTGCTAGCAAAGAGTAGAGATAGGAGAAGAACAAGAACAGATACAAATAATACAACCACGACGACAGTTGATGATTTTGGTGATGTGTTGTTTTTTCAAGAGGATGACGAAATGGAAATGGGACAAGATTTTAGGTTGGAGTATAGCGAAGACGAGGATTCGGATGAATACACAAGTGATGAAGAAGATGATGATGGGTTTTATATTTATTGA 1167 0.4807 MNSVSLHNTLHFHFHHPFVSSKPTPSFLFLKTKPQTHTQCCTTTTTTTTTTNSNIVDIDMVKTKQGTYVPKQNKVVVLWDLDNKPPRGPPYDAALSLKTLAERFGELTDISAYANRHAFIHLPQWVLDQRRERKHLDILERKGVVNPSEPYLCSVCGRKCKTNVDLKKHFKQLHQRERQKKLNRLSSLKGKKRQKFKERFISGDQKYNDAVREIVKPKVGYGLASELRRAGVFVKTVEDKPQAADWALKKQMMHSMNRGIDWLFLVSDDSDFSDMLRKAREANLGTVVVGDVDRALGRHADLWVPWNAVENGEVLEMDLLAKSRDRRRTRTDTNNTTTTTVDDFGDVLFFQEDDEMEMGQDFRLEYSEDEDSDEYTSDEEDDDGFYIY 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04715 388 MobiDBLite consensus disorder prediction 360 388 - -
Vifa3g04715 388 CDD PIN_LabA-like 161 291 - -
Vifa3g04715 388 MobiDBLite consensus disorder prediction 366 388 - -
Vifa3g04715 388 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 38 355 - -
Vifa3g04715 388 Gene3D - 68 308 - -
Vifa3g04715 388 ProSitePatterns Zinc finger C2H2 type domain signature. 153 174 IPR013087 -
Vifa3g04715 388 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 179 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04715 Vifa-Chr3 1356758529 1356759695 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04715 8 385 C2H2 Transcription Factor Family AT5G52010 55.754 7.84e-157 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa3g04715 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04715 - - qlo:115974152 458.759