Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04712 ATGCAATCAGTTATAGAATCTGCAACACAAAATCTTGACACACAAAAAGAAGACATAATCTTTTCAAATCTTTCCCTAAGACTAGCAACTGATATCATAGGAGATGCAGCATTTGGAGTCAACTTTGGTCTCTCTAAGGCTCAATCAATTTGTGAATCAATGAACAATGTTAACAATGTAGAACATTCAAGTACTAGTAATGATGAAGTATCAAATTTCATCAATCAACATATTTACTCCACAACACAACTTAAGATGGATTTGTCGGGTTCATTTTCGATTATAATTGGCTTAATTGCTCCAATTCTTCAAGAGCCATTTAGGCAGATTCTTAAGAGAATACCAGGCACTATGGATTGGAAAATGGAATGTACTAATAGAAATTTAACCGGTCGTCTTGACGAGATTGTTAATAAGAGAATGGAAGATAAGAATCGAAGAACTTCGAAGAATTTCTTGTCGCTTATATTGAATGCAAGAGAATCAAAGAGTGTGTCGGAGAATGTGTTTTCGTTCGATTACATAAGCGCGGTTACTTATGAACATTTACTTGCTGGATCAGCTACAACATCTTTTACTTTGTCATCTGTTGTTTATTTGGTTGCTGGTCACATAAATGTTGAGAGAAAATTGCTTCAAGAGATTGATGAGTTTGGAACACATGATAGGATACCTAATGCTAAAGATCTTAATCAAAGTTTTCCTTATCTTGATCAGGTGATTAAAGAGGCAATGAGGATTTACACTGTCTCTCCATTGGTTGCAAGAGAAACATCAAATGAAGTAGACATAGGAGGTTACCTTCTCCCAAAGGGAACATGGGTATGGTTAGCACTTGGAGTTCTAGCAAAAGACTCAAGAAACTTTGCAGAGCCAGAGAAATTCAAACCAGAGAGATTTGATCCAAAATGTGAAGAAATGAAAAGAAGGCATCCTTATGCATTCATACCATTTGGAATTGGTCCAAGAGCATGTATTGGCCAGAAATTTTCATTGCAAGAGATCAAACTTACTTTGATTCATTTATATAGAAAATATGTATTTCACCATTCACTTAGCATGGAAAAACCTATAGAACTTGAATATGGTTTAGTTCTTAATTTCAAGCATGGTGTCCAGCTCAGAGTAATAAAAAGAGCATAA 1143 0.35 MQSVIESATQNLDTQKEDIIFSNLSLRLATDIIGDAAFGVNFGLSKAQSICESMNNVNNVEHSSTSNDEVSNFINQHIYSTTQLKMDLSGSFSIIIGLIAPILQEPFRQILKRIPGTMDWKMECTNRNLTGRLDEIVNKRMEDKNRRTSKNFLSLILNARESKSVSENVFSFDYISAVTYEHLLAGSATTSFTLSSVVYLVAGHINVERKLLQEIDEFGTHDRIPNAKDLNQSFPYLDQVIKEAMRIYTVSPLVARETSNEVDIGGYLLPKGTWVWLALGVLAKDSRNFAEPEKFKPERFDPKCEEMKRRHPYAFIPFGIGPRACIGQKFSLQEIKLTLIHLYRKYVFHHSLSMEKPIELEYGLVLNFKHGVQLRVIKRA 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04712 380 PANTHER THROMBOXANE-A SYNTHASE 1 379 - -
Vifa3g04712 380 PRINTS E-class P450 group I signature 315 325 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g04712 380 PRINTS E-class P450 group I signature 28 46 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g04712 380 PRINTS E-class P450 group I signature 238 256 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g04712 380 PRINTS E-class P450 group I signature 278 302 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g04712 380 PRINTS E-class P450 group I signature 174 191 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g04712 380 PRINTS E-class P450 group I signature 325 348 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g04712 380 PRINTS E-class P450 group I signature 194 220 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g04712 380 Pfam Cytochrome P450 18 366 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g04712 380 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 318 327 IPR017972 GO:0005506|GO:0016705
Vifa3g04712 380 PRINTS P450 superfamily signature 239 250 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g04712 380 PRINTS P450 superfamily signature 316 325 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g04712 380 PRINTS P450 superfamily signature 325 336 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g04712 380 PRINTS P450 superfamily signature 185 202 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g04712 380 Gene3D Cytochrome P450 1 380 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g04712 380 SUPERFAMILY Cytochrome P450 15 379 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04712 Vifa-Chr3 1353963543 1353965049 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04712 1 379 Cytochrome P450 AT2G26170 69.129 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04712 K20771 - gmx:100805689 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04712 3 1353963543 1353965049 Vifa2g03777 2 1107202031 1107208109 PCT