Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04693 ATGAATTCTTCTTCTAGGAACACTGTTGGGCCAGGAGGAATGGGAATGGATATACCGATTATGCATGAGAGTGATAGGTATGAGCTTGTTCGTGATATTGGGTCTGGGAATTTTGGGGTGGCTAGGCTTATGAGAGATAAACTCACTAATCAACGTGTTGCTGTCAAGTATATTGACCTTTATTTCTCTCAGTTATTGATTGATGAAAATGTACAAAGGGAAATTATAAATCATAGATCACTAAGGCATCCTAATATTGTCAGATTCAAGGAGGTGATACTTACCCCTACACATTTAGCTATTGATGAGGCACGGTTTTTCTTTCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATGCAAGTATGTCATCGTGACTTGAAGTTGGAGAACACGTTGTTGGATGGTAGTCCGGCTCCTCGTTTGAAGATTTGTGATTTTGGGTATTCAAAGTCATCAGTGCTACATTCACAACCAAAATCTACCGTCGGTACACCTGCATATATCGCTCCTGAAGTTTTGCTTAAGAAGGAATATGATGGCAAGATTGCAGATGTATGGTCTTGTGGTGTTACCTTATATGTCATGTTAGTGGGCGCATATCCTTTCGAGGATCGGGAGGAGCCTAAAAATTTCCGGAAGACTATTCATAGGATTTTGAAAGTCCAATACTCAATTCCTGATTATGTTCAAATATCTCCCGAGTGCCATCATTTGATCTCAAGGATCTTCGTTGCAGACCCTGCACAGAGAATAAGTATGTCTGAGATTCGAAACCACGTGTGGTTTTTGAAGAACCTTCCAGCCGATCTTATAGTTGGAAATACAATGAACGACCAGTTTCAAGAGCCTGAACAACCGATGCAGACCGTTGAAGAAATCATGCAGATAATTAGTGAAGCTACTATTCCTGCAGCTGGAACTCATCAGTCTCTCAACCAGTATCTTACCGGTAGTTTGGACATCGATGATGAAATGGACGAGGATGTGGAAACTGATCCCGACCTTGATATCGATAGCAGTGGTGAGATAGTTTATGCAATGTAA 1050 0.4095 MNSSSRNTVGPGGMGMDIPIMHESDRYELVRDIGSGNFGVARLMRDKLTNQRVAVKYIDLYFSQLLIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDREEPKNFRKTIHRILKVQYSIPDYVQISPECHHLISRIFVADPAQRISMSEIRNHVWFLKNLPADLIVGNTMNDQFQEPEQPMQTVEEIMQIISEATIPAAGTHQSLNQYLTGSLDIDDEMDEDVETDPDLDIDSSGEIVYAM 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04693 349 SMART serkin_6 27 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04693 349 Gene3D Phosphorylase Kinase; domain 1 6 97 - -
Vifa3g04693 349 SUPERFAMILY Protein kinase-like (PK-like) 19 301 IPR011009 -
Vifa3g04693 349 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Vifa3g04693 349 PANTHER SERINE/THREONINE KINASE 26 283 - -
Vifa3g04693 349 ProSiteProfiles Protein kinase domain profile. 27 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04693 349 Pfam Protein kinase domain 99 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04693 349 FunFam Serine/threonine-protein kinase SRK2E 88 272 - -
Vifa3g04693 349 Gene3D Transferase(Phosphotransferase) domain 1 98 275 - -
Vifa3g04693 349 ProSitePatterns Protein kinases ATP-binding region signature. 33 56 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04693 Vifa-Chr3 1348439224 1348441491 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04693 26 294 CBL-interacting serine-threonine protein kinases AT5G25110 38.591 1.83e-54 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vifa3g04693 Pkinase 5.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04693 K14498 - gmx:100804702 590.882