Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04686 ATGAATGTGCGCAAGGGATCCACGGTTTGGATTCCGGACAAGGAATTGGCCTGGGTAGCTGCTGAAGTTGTTGATTCCGATGGAAATTCTGTTCAACTTGTAACTGATTCCGGCAAGAAGGTTTTTGTTTCGCCGGAGAAATTGTGTCAGAGGGATGCGGATGAAGAGGAGCTTGGAGGATATGAGGATATGACGAGGTTGACTTACTTGAATGAACCGGGAGTGTTGTATAATATTCGCAGGAGATATGCACTTAATGATATCTATACATATACAGGGAGCATTTTAATTGCCGTTAATCCCTTCACAAAGCTTCCTCATTTGTATAATAACCATATGATGGAGCAGTATAAGGGAGCTCCATTGGGTGAGCTTAGCCCCCATGTTTTTGCTGTTGCTGACGCATCTTATAGAGCAATGATGAATGAAGGTAAAAGTCAATCTATCTTGGTAAGCGGTGAAAGTGGTGCTGGAAAAACTGAGACTACAAAATTGATTATGCAATATCTTACTTTTGTTGGCGGCCGTGCCTGTGGTGATGATAGAACAGTTGAACAACAAGTTCTTGAATCAAATCCACTTTTAGAGGCATTTGGCAATGCAAGGACGGTTAGGAATGACAATTCAAGTCGTTTTGGGAAGTTTGTTGAAATTCAGTTTGATAGAAATGGTAGAATATCTGGTGCTGCAATCAGAACTTACTTATTAGAAAGATCACGAGTTGTGCAGATAACGGATCCAGAAAGAAATTATCACTGCTTCTATCAGTTGTGCGCCTCTGAAAGGGATGCAGAGGAGTATAAATTAGGACATCCAAGTCATTTTCATTATTTAAATCAAAGTAAAGTCTATGAATTAAACGGTGTAAGCAATGCTGAAGAATACATGAAGACGAGGAGGGCAATGGATATTGTTGGCATCAGTCACGAGGATCAGGAAGCCATATTTCGTGTCTTAGCTGCAATTTTGCACTTGGGAAATGTTGAATTTTCTCCTGGAAAAGAGCATGACTCATCAGTAATAAAGGATGAAAAATCAATATTTCATATGAAGATGGCTGCTGATCTTTTCATGTGTGATGTAGACCTATTGCTGGCAACATTGTGTACTCGATCAATACAAACTCGAGAAGGAAATATTATCAAGGCCCTTGATTGTAATGCTGCTGTTGCTCGTCGGGATACTTTGGCAAAAACAGTTTATGCTCGTTTATTTGATTGGCTTGTTGATAAGATCAATATGTCTGTTGGACAAGATATCAATTCCCAGATGCAAATTGGAGTTTTGGATATTTATGGTTTTGAGTGCTTTAAGAATAATAGTTTTGAGCAATTCTGTATCAATTTTGCAAATGAAAAGCTTCAGCAACATTTTAATGAGCATGTATTCAAAATGGAGCAAGAGGAGTATGGCAAAGAAGAAATTAACTGGAGTTACATTGAATTTGTGGACAACCAAGATGTTCTAGATTTGATAGAGAAGAAACCTATTGGTATCATTGCTCTGTTGGATGAAGCTTGCATGTTTCCAAAATCAACTCATGAAACATTCTCTACTAAGTTGTTTCAGCATTTCCGGTCTCACCCTAGGTTGGAAAAGGAAAAGTTTTCACAAACAGATTTTATAGTTTCTCATTATGCTGGAAAGGTCACATATCATACAGATACCTTTTTGGACAAAAATCGTGACTATATTGTTGTGGAACATTGTAATCTATTATCTTCTTCAAGCTGCCTTTTTGTGTCCGGTCTTTTCCCTTTGCCACCTGAGGAATCTTCAAGATCATCATACAAGTTTTCTTCAGTAGCTACGAGATTTAAGCAACAACTTCAAGCACTCATGGAGACCCTCAAGTCAACAGAGCCTCATTACATACGATGTGTGAAGCCAAATTCATTGAATCAACCACAGATGTTTGAGAATGCAAGCATCATACATCAGTTACGCTGTGGGGGTGTCCTTGAAGCTATTCGGATAAGTCTGGCTGGTTACCCCACCCGGAGAACGTATTCAGAGTTTGTTGATCGCTATGGATTAATAAGCCCTGAGTTTTTTGATGGAAGTTATGATGATAAAGCTGCAACTGAGAAAATTTTACATAAGCTCAAGCTTGGGAATTTTCAGTTGGGCAGAACCAAAGTATTTCTCAGGGCTGGTCAAATTGGTGTTTTGGACTCCAAGCGTGCTGAAGTTTTGGACAACGCTGCTAAGCATATTCAGCGCCAACTGAAGACATTTATTACACGCATGCATTTCATTTCAGTAAGAGCAGCTGCAGTTTCTCTTCAGGCATGCTGCAGGGGATACATTGCCCAAAAGATGTATGCAGCTAAAAGAGAAACAGCCGCAGCTATCTCCATTCAAAAGAATATACGTATGTGGCTAACAAGGCATGCATATATGAAACTATATTCCTCTGTTATTATCATTCAATCGCATGTTCGGGGTTTTATTACTCTTCAAAGATTCTTGCATGAAAAAGAACATAGAGCTGCTATATCTATTCAGGCCTGTTGGAGGATGTACAATGTTAGATCGACTTTCCGGCGGCATCTTGCTTCAATTGTGGCAGTACAATGTTTATGGCGCTGTAGACAAGCAAAAAGGGAGTTTCGTAAACTTAAACAGGAGGCTAATGAATCTGGTGCCCTCCGTCTTGCTAAAAGTAAACTTGAGAAGCAAATGGAAGAGCTCACATGGCGTTTGCATCTAGAAAAGAAAATAAGGGTTTCTAATGAAGAGGCCAAGCAAAGAGAGATTTCCACACTTCGAAAAATGTTAGAAGCTCTGAATCTTGAATTAGATACGGCCAAACTGGCTACAATTAATGAGTGCAACAAGAATGCTGTTCTGCAAAATCAACTGGAATTGTCTGCCAAAGAGAAATCTGCTTTAAAGAGAGAGCTAGTTACTGTGCATGAATTACGAACGGAAAATGCTATGCTAAAGGTTTCACTGGATGCCTTTGAGAAGAAGTACAAATCTTTAGAGGTCGAGCATATAAACGCTCAAAAAGGCCAAGACAAAACCATTGAGAAACTGAGGGAATTTGAACAGAAGTGCTCTCAACTCGAGCAAAATGTAAAAAGCCTTGAGGAAAAGCTATTAAGTTCGGAGAATGAAAATCAATTGCTTCGTCAAAAAGCCTTAAGTGCTCCTCGCAAGAGTAACCGCTTAGGTCTTGCAAAGTCTTTTTCAGAAAAATACTCAACTCCAATAGCCTCCCGCACTGAGCGAAAGCCCGTATTCGAGACACCCACACCCACAAAACTTGCTGTCCCTTTTACGCTAGCCATGTCAGACTCTCATCGGTCGAAGTCAACAGCAGAAAGGCACCAGGACAATTATGAATTCCTCTCTAGGTGCATCAAAGAGAATTTGGGATTCAAAAATGGCATAAATGACGTTCTAAAGGTTAGGGAGGATGACATTGTCTGGCCATATTGGCTATCCAATACTTCTGCTCTTCTATGCCTCTTACAGAGAAACTTACGTTCAAATGGCTTTTTAGCTACCAATAATGCTCAACGTTATACTGGATCATCTGGCTTGGCAAGCAGAACCGGGCATGGACCGAAATCTCCATTTAAGTTTATTGGATATGATGATGGTACGTCTCATGTGGAGGCAAGATATCCAGCTATACTTTTCAAGCAACAACTAACTGCATGTGTTGAGAAAATTTTTGGGCTTCTACGTGATAATTTGAAAAAAGAACTTTCTCCACTTCTGCAACAATGTATTCAGACACCCAAAGCAGGAAGAGTGCATGGTGTAAAATCATCTAGATCTCCTGTTGGGCTTTCTCAACAATCATCTGGTAGTCAATGGGACAACATTGTCAAATTTTTGGATTCACTAATGAGCAAACTTCGTGGAAATCATGTGCCACCCTTCTTCATTCGTAAACTAGTTACCCAAGTTTTTTCCTTCATCAATATCACACTCTTCAACAGTCTTCTTTTACGTCGTGAATGTTGCACATTCTCCAATGGTGAATATATGAAATCTGGTCTCGCAGAACTAGAGAAATGGATAGCCAATGCAAAGGAGATGTATGCAGGAACGTCTTGGCATGAGTTGAATTATATAAGGCAAGCTGTTGGGTTCTTGGTAATACATCAGAAGAGGAAAAAATCATTGGAAGAAATTCGACAGGATCTCTGTCCGGTGTTGACTGTCAGACAAATCTATCGAATCAGTACTATCATTCCTTTCTCTGCGGAAGATGTAGATATGGCAATCCCTCCAATAGATTTGGACGAGATTGATCTCCCATTATTCGTGTCGGATTATTCTTGTGCGCAGTTTCTAAATTCAAAACAGGAGTAG 4332 0.3982 MNVRKGSTVWIPDKELAWVAAEVVDSDGNSVQLVTDSGKKVFVSPEKLCQRDADEEELGGYEDMTRLTYLNEPGVLYNIRRRYALNDIYTYTGSILIAVNPFTKLPHLYNNHMMEQYKGAPLGELSPHVFAVADASYRAMMNEGKSQSILVSGESGAGKTETTKLIMQYLTFVGGRACGDDRTVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQFDRNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCASERDAEEYKLGHPSHFHYLNQSKVYELNGVSNAEEYMKTRRAMDIVGISHEDQEAIFRVLAAILHLGNVEFSPGKEHDSSVIKDEKSIFHMKMAADLFMCDVDLLLATLCTRSIQTREGNIIKALDCNAAVARRDTLAKTVYARLFDWLVDKINMSVGQDINSQMQIGVLDIYGFECFKNNSFEQFCINFANEKLQQHFNEHVFKMEQEEYGKEEINWSYIEFVDNQDVLDLIEKKPIGIIALLDEACMFPKSTHETFSTKLFQHFRSHPRLEKEKFSQTDFIVSHYAGKVTYHTDTFLDKNRDYIVVEHCNLLSSSSCLFVSGLFPLPPEESSRSSYKFSSVATRFKQQLQALMETLKSTEPHYIRCVKPNSLNQPQMFENASIIHQLRCGGVLEAIRISLAGYPTRRTYSEFVDRYGLISPEFFDGSYDDKAATEKILHKLKLGNFQLGRTKVFLRAGQIGVLDSKRAEVLDNAAKHIQRQLKTFITRMHFISVRAAAVSLQACCRGYIAQKMYAAKRETAAAISIQKNIRMWLTRHAYMKLYSSVIIIQSHVRGFITLQRFLHEKEHRAAISIQACWRMYNVRSTFRRHLASIVAVQCLWRCRQAKREFRKLKQEANESGALRLAKSKLEKQMEELTWRLHLEKKIRVSNEEAKQREISTLRKMLEALNLELDTAKLATINECNKNAVLQNQLELSAKEKSALKRELVTVHELRTENAMLKVSLDAFEKKYKSLEVEHINAQKGQDKTIEKLREFEQKCSQLEQNVKSLEEKLLSSENENQLLRQKALSAPRKSNRLGLAKSFSEKYSTPIASRTERKPVFETPTPTKLAVPFTLAMSDSHRSKSTAERHQDNYEFLSRCIKENLGFKNGINDVLKVREDDIVWPYWLSNTSALLCLLQRNLRSNGFLATNNAQRYTGSSGLASRTGHGPKSPFKFIGYDDGTSHVEARYPAILFKQQLTACVEKIFGLLRDNLKKELSPLLQQCIQTPKAGRVHGVKSSRSPVGLSQQSSGSQWDNIVKFLDSLMSKLRGNHVPPFFIRKLVTQVFSFINITLFNSLLLRRECCTFSNGEYMKSGLAELEKWIANAKEMYAGTSWHELNYIRQAVGFLVIHQKRKKSLEEIRQDLCPVLTVRQIYRISTIIPFSAEDVDMAIPPIDLDEIDLPLFVSDYSCAQFLNSKQE 1443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04686 1443 ProSiteProfiles IQ motif profile. 828 857 IPR000048 GO:0005515
Vifa3g04686 1443 PRINTS Myosin heavy chain signature 89 108 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g04686 1443 PRINTS Myosin heavy chain signature 146 171 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g04686 1443 PRINTS Myosin heavy chain signature 193 220 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g04686 1443 PRINTS Myosin heavy chain signature 425 453 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g04686 1443 PRINTS Myosin heavy chain signature 478 506 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g04686 1443 ProSiteProfiles Myosin motor domain profile. 59 729 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g04686 1443 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 820 878 IPR027417 -
Vifa3g04686 1443 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 778 IPR027417 -
Vifa3g04686 1443 Gene3D - 435 620 - -
Vifa3g04686 1443 ProSiteProfiles IQ motif profile. 851 880 IPR000048 GO:0005515
Vifa3g04686 1443 ProSiteProfiles Dilute domain profile. 1142 1431 IPR002710 -
Vifa3g04686 1443 Pfam Myosin N-terminal SH3-like domain 6 46 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vifa3g04686 1443 Pfam IQ calmodulin-binding motif 781 800 IPR000048 GO:0005515
Vifa3g04686 1443 Pfam IQ calmodulin-binding motif 805 823 IPR000048 GO:0005515
Vifa3g04686 1443 Pfam IQ calmodulin-binding motif 829 849 IPR000048 GO:0005515
Vifa3g04686 1443 Pfam IQ calmodulin-binding motif 756 773 IPR000048 GO:0005515
Vifa3g04686 1443 SMART MYSc_2a 53 730 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g04686 1443 Coils Coil 948 968 - -
Vifa3g04686 1443 Gene3D Kinesin motor domain 62 659 IPR036961 -
Vifa3g04686 1443 PANTHER MYOSIN 804 1389 - -
Vifa3g04686 1443 SMART DIL_2 1303 1409 IPR002710 -
Vifa3g04686 1443 ProSiteProfiles IQ motif profile. 780 807 IPR000048 GO:0005515
Vifa3g04686 1443 Coils Coil 913 940 - -
Vifa3g04686 1443 Gene3D - 249 306 - -
Vifa3g04686 1443 Pfam DIL domain 1304 1401 IPR002710 -
Vifa3g04686 1443 Gene3D - 782 829 - -
Vifa3g04686 1443 Gene3D - 830 879 - -
Vifa3g04686 1443 Gene3D - 731 781 - -
Vifa3g04686 1443 SMART iq_5 827 849 IPR000048 GO:0005515
Vifa3g04686 1443 SMART iq_5 779 801 IPR000048 GO:0005515
Vifa3g04686 1443 SMART iq_5 802 824 IPR000048 GO:0005515
Vifa3g04686 1443 SMART iq_5 754 776 IPR000048 GO:0005515
Vifa3g04686 1443 SMART iq_5 731 753 IPR000048 GO:0005515
Vifa3g04686 1443 SMART iq_5 850 872 IPR000048 GO:0005515
Vifa3g04686 1443 Pfam Myosin head (motor domain) 62 717 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g04686 1443 Coils Coil 864 884 - -
Vifa3g04686 1443 SUPERFAMILY Myosin S1 fragment, N-terminal domain 3 41 - -
Vifa3g04686 1443 Gene3D Myosin VI head, motor domain, U50 subdomain 308 598 - -
Vifa3g04686 1443 Gene3D - 663 730 - -
Vifa3g04686 1443 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 778 826 IPR027417 -
Vifa3g04686 1443 FunFam Myosin heavy chain 249 303 - -
Vifa3g04686 1443 Coils Coil 972 999 - -
Vifa3g04686 1443 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 4 53 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vifa3g04686 1443 ProSiteProfiles IQ motif profile. 756 784 IPR000048 GO:0005515
Vifa3g04686 1443 Coils Coil 1007 1048 - -
Vifa3g04686 1443 CDD MYSc_Myo11 73 717 IPR036018 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04686 Vifa-Chr3 1345211875 1345248407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04686 1 1441 Myosins gene family AT4G33200 68.140 0.0 2077
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04686 K10357 - gmx:100790815 2431.37