Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04675 ATGCAAGAGTTCGGGGATAACACTAACTTCGTTAATACTGCGTCAACCGAAAAATCCATGGGATGGGGTCACCTTGGAAGACACGGCTCCGACGCCGATGCAGGTCCGAGCACCAGCACGGCGGAGCAACGCCGCTTTCCGTCGGCGGCCCAGCCGGAAATGATGAGAGCAGCTGAAAAAGACGATCAGTACGCCTCTTTCGTTTACGAAGCCTGTCGCGACGCCTTCCGCCACCTCTTCGGTACTAGAGTTGCGGTGGCTTATCAAAACGAGACGAAACTTTTAGGGCAAATGCTTTATTATGTTCTCACAACAGGCTCTGGACAACAAACACTTGGAGAGGAATACTGTGACATCACTCAGGTTGCAGGACCTTATGGACTTCCTCCTACACCGGCCAGGCGTGCTTTGTTTATTGTATACCAAACGGCGATTCCATACATTGTAGAACGAATTAGTTCTAGAATTGCTTCCCGAGGGATTATCCTATCTGATTACGAGTATGCTGAGGTTTTTGGTGAAAATGCCCGCGGGAGTGAACTTGCTCCTTCGTCTGCCTCAGGGCATTCTACTTCAACTATGACGAGGTTGAAGGAGAAAGTCCGTGGGTTTTGGTTGCATATGGTTCAGAGATGGCCTACGATGCTCCCTTTTGTTCGTGAGTTATTGCAGCTGGTTCTTCGTGCTAACCTCATGTTGTTTTACTTTGAAGGCCTCTATTATCATATATCCAAACGTGCTTCTGCCATTCGTTATGTATTCATTGGAAAAGCATCAAATCAAAGACCCAGATATCAAATATTGGGAGTATTTCTGCTGATTCAACTTTGTGTAATAGCTGCTGAAGCGCTTCGTCGAAGAAATTTTACATCAATTGCTGGTTCAGTTCATCAGGCATCCTTTGCAACCCACAATACATCAGCAGGACACGGTTTGCCTGTTCTAAATGAAGAAGGTAATTTGGCATCTCCAGAAGCTGACGAGGGAAGTTGGGTCTCTGGATCTTCATCTTCTGAGCATCATGCAACCAGTGGTGTTAGCAAATGCGCGCTTTGCTTGAGTAATCGCCAACACCCCACAGCTACTTCATGTGGCCATGTATTTTGCTGGAACTGTATTACAGAATGGTGCAACGAAAAGCCAGAGTGCCCTCTTTGCCGCACCCCTATAACACACTCAAGTCTAGTTTGTATTTATCATTCAGACTTCTAG 1212 0.467 MQEFGDNTNFVNTASTEKSMGWGHLGRHGSDADAGPSTSTAEQRRFPSAAQPEMMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVAYQNETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVAGPYGLPPTPARRALFIVYQTAIPYIVERISSRIASRGIILSDYEYAEVFGENARGSELAPSSASGHSTSTMTRLKEKVRGFWLHMVQRWPTMLPFVRELLQLVLRANLMLFYFEGLYYHISKRASAIRYVFIGKASNQRPRYQILGVFLLIQLCVIAAEALRRRNFTSIAGSVHQASFATHNTSAGHGLPVLNEEGNLASPEADEGSWVSGSSSSEHHATSGVSKCALCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCIYHSDF 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04675 403 Pfam Pex2 / Pex12 amino terminal region 61 286 IPR006845 -
Vifa3g04675 403 FunFam Peroxisome biogenesis factor 10 324 400 - -
Vifa3g04675 403 SMART ring_2 349 386 IPR001841 -
Vifa3g04675 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 325 400 IPR013083 -
Vifa3g04675 403 Pfam Zinc finger, C3HC4 type (RING finger) 348 392 - -
Vifa3g04675 403 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 47 401 IPR025654 GO:0005778|GO:0007031|GO:0008270|GO:0016558
Vifa3g04675 403 MobiDBLite consensus disorder prediction 21 55 - -
Vifa3g04675 403 SUPERFAMILY RING/U-box 348 392 - -
Vifa3g04675 403 ProSitePatterns Zinc finger RING-type signature. 364 373 IPR017907 -
Vifa3g04675 403 ProSiteProfiles Zinc finger RING-type profile. 349 387 IPR001841 -
Vifa3g04675 403 CDD RING-HC_PEX10 347 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04675 Vifa-Chr3 1341672068 1341677031 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04675 343 399 C3H Transcription Factor Family AT4G28270 32.877 6.43e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04675 K13346 - gmx:100783914 677.552