Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04672 ATGGACGGACTAAATATTCCTTACAATCCTCGTACTGTCGACGAAGTCTTTCGGGATTTCAGAGGCCGCAGAACTGCATTAATCAAAGCCCTATCTACTGATGTCGACGAGTTCTTCCGGCAGTGTGATCCCGATAAGGAAAACCTTTGTCTTTATGGATCTCCCAGTGAGCAGTGGGAGGTGACCCTGCCAGCTGAAGAAGTGCCGCCTGAGATTCCGGAGCCAGCATTGGGTATTAACTTTGCGAGAGATGGGATGCTAGAAAAGGATTGGCTGTCTTTGGTTGCTGTACACAGTGATGCTTGGTTATTATCAGTGGCTTTTTATTTCGGTGCTAGGTTTGGATTCGATAAAGCTGATAGGAAAAAACTATTTGATATGATAAATGATCTTCCAACAATCTTTGAAACTATTGCGGGGGTTGTCAAGAAACCAGGAAAGGATAAGTCATCATCGGTTTCTAATAATAGCAGTACCAAATCTGAAGCAAAGCCCAAGCAAGGTTCTGAACCTCAGGCAAAATTTTCAAAACCAATGGCAATGCAAATGCAATCAAAGGAAAATGACGAGGACGGTCTAGGCGTGGACGAGGAAGACGAGGAAGACGAGGAAGACATGGAAGATGACGAAGAGCACGGAGATACTTTGTGTGGGGCATGCGGAGAGAGCTATGAAACTAACCAGTTCTGGATTTGCTGTGACATTTGTGAGCAGCAAGAGAGCTCGCCCTAG 732 0.4536 MDGLNIPYNPRTVDEVFRDFRGRRTALIKALSTDVDEFFRQCDPDKENLCLYGSPSEQWEVTLPAEEVPPEIPEPALGINFARDGMLEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKADRKKLFDMINDLPTIFETIAGVVKKPGKDKSSSVSNNSSTKSEAKPKQGSEPQAKFSKPMAMQMQSKENDEDGLGVDEEDEEDEEDMEDDEEHGDTLCGACGESYETNQFWICCDICEQQESSP 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04672 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 239 IPR013083 -
Vifa3g04672 243 MobiDBLite consensus disorder prediction 144 218 - -
Vifa3g04672 243 MobiDBLite consensus disorder prediction 148 166 - -
Vifa3g04672 243 Pfam Alfin 12 139 IPR021998 GO:0006355|GO:0042393
Vifa3g04672 243 MobiDBLite consensus disorder prediction 191 212 - -
Vifa3g04672 243 PANTHER CPG BINDING PROTEIN 9 238 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04672 Vifa-Chr3 1340023230 1340025529 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04672 1 238 Alfin-like Transcription Factor Family AT3G42790 57.741 4.63e-85 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04672 K26274 - vvi:100247536 327.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04672 3 1340023230 1340025529 Vifa3g04672 3 1340023230 1340025529 ECH