Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04666 ATGGGTTCTTATATATTTTGTGCTATTTTGTTATTATCCATTGGAATTTCTTTGGCTTCTTCAATTGAAGATCAAAAGAGAGATAAGATAAGTTGGTTACCAGGACAACCAAAGAATATTGGATTTGAACAGTATTCAGGTCATGTGACTGTGAATGAACAGAATGGAAGAGCATTGTTTTATTGGTTGACTGAAGCACCACTGACTCATCAACCCAATTCAAAGCCACTACTTCTATGGCTTAGTAGTGGTCCTGGTTGTTCTGCTATTGCTTTTGGTGCTTCCGAAGAAATTGGCCCTTTTCGTATTAAGCCTTATGGCAAATCACTTTACTTGAATCCTAATGCTTGGAACACTTTGGCAAATATATTGTTCCTTGATTCTCCTGCTGGTGTTGGATTTTCTTATTCTAATACAACATCAGATCTGTACACATTTGGTGACCAGAAAGCAGCTGAGGATTCATATACTTTTCTTGTTAATTGGCTTGAAAGATTTCCTCAGTATAAGCATAGAGAACTCTACATTGGTGGGATAAGTTATGCAGGTCATTATGTTCCTCAATTGGCTCAAATTGTTTACCGGAGAAATAAGGGAGTCAATAATCCAGTTATCAATCTTAAGGGATTTATGGTTGGAAATGGTGTTATTGATGATTATCATGATTTAGTAGGAACATTTGAGTACTGGTGGACACATGGTTTGATTTCAGATTCTACATATAAACTTCTAGGAACTGCGTGTGTCTTTGGATCTTCTACGCATCCATCAGCGCAATGTACGCAGGCAATTAACGTTGCAGCTGCTGAGCAAGGAAACATTGATCTATTTAACATTTATGCACCGCTTTGTAACAGTACATCGTCGCTTAAACGCGACTTGAACAGTCGTTATCCAGGGATGTCTATAGCATATGATCCATGTACCGATAGTTATTCTGATTCGTATTTCAACCGTCCGGAAGTTCAGAAGGCACTTCATGCCGATGCAATTGGGATTCCATATACATGGAAGGCATGCAGTGATGTTGTCCAGAATAGTAATTGGGGTGATTCGCCATTGTCCGTGCTTCCTATATATCATGAACTTATCAATGCTAGTCTAAGGATATTGGTATTCAGTGGAGACAATGATGGTATAGTTCCAGTAAGCGCCACTCGATATTCAATTGATGCATTGAAGCTTCCAACCATCGTCAATTGGTATGCTTGGTATGACAGTGGCAAGGTTGCTGGATGGAGTCAAGTTTATAAAGGGCTAACATTGGTGACAGTAAGAGGAGCTGGACATAGAGTTGCTCTTCATAAGCCTCCCGAAGCGTTTATTGTTTTTAGATCATTTTTGGAGAACAAGAACATGCCATCCTCAAGTTGA 1374 0.3916 MGSYIFCAILLLSIGISLASSIEDQKRDKISWLPGQPKNIGFEQYSGHVTVNEQNGRALFYWLTEAPLTHQPNSKPLLLWLSSGPGCSAIAFGASEEIGPFRIKPYGKSLYLNPNAWNTLANILFLDSPAGVGFSYSNTTSDLYTFGDQKAAEDSYTFLVNWLERFPQYKHRELYIGGISYAGHYVPQLAQIVYRRNKGVNNPVINLKGFMVGNGVIDDYHDLVGTFEYWWTHGLISDSTYKLLGTACVFGSSTHPSAQCTQAINVAAAEQGNIDLFNIYAPLCNSTSSLKRDLNSRYPGMSIAYDPCTDSYSDSYFNRPEVQKALHADAIGIPYTWKACSDVVQNSNWGDSPLSVLPIYHELINASLRILVFSGDNDGIVPVSATRYSIDALKLPTIVNWYAWYDSGKVAGWSQVYKGLTLVTVRGAGHRVALHKPPEAFIVFRSFLENKNMPSSS 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04666 457 FunFam Carboxypeptidase 305 453 - -
Vifa3g04666 457 Gene3D - 356 449 - -
Vifa3g04666 457 FunFam Carboxypeptidase 356 450 - -
Vifa3g04666 457 Pfam Serine carboxypeptidase 34 450 IPR001563 GO:0004185|GO:0006508
Vifa3g04666 457 Gene3D - 308 345 - -
Vifa3g04666 457 SUPERFAMILY alpha/beta-Hydrolases 26 453 IPR029058 -
Vifa3g04666 457 FunFam Carboxypeptidase 24 286 - -
Vifa3g04666 457 PRINTS Carboxypeptidase C serine protease (S10) family signature 420 433 IPR001563 GO:0004185|GO:0006508
Vifa3g04666 457 PRINTS Carboxypeptidase C serine protease (S10) family signature 162 187 IPR001563 GO:0004185|GO:0006508
Vifa3g04666 457 PRINTS Carboxypeptidase C serine protease (S10) family signature 113 125 IPR001563 GO:0004185|GO:0006508
Vifa3g04666 457 PRINTS Carboxypeptidase C serine protease (S10) family signature 126 136 IPR001563 GO:0004185|GO:0006508
Vifa3g04666 457 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 29 437 IPR001563 GO:0004185|GO:0006508
Vifa3g04666 457 Gene3D alpha/beta hydrolase 24 286 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04666 Vifa-Chr3 1338932356 1338934730 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04666 318 451 Calmodulin-binding Proteins AT2G22960 33.333 1.23e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04666 K16297 - gmx:100812000 719.539