Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04664 ATGGAAGAGTTATTGTATGTGGTTCCCGTGCCATTACGAGTAGGTAACTTCGTCTGTGATAACTCAGTCTTAGCTACACACATGGATTTATCCAGATTTAAGGTAATGTCAGATGCAGGGTCGTTGTCTAATTCTGTAACTAAGGTTTCCACCGAGACAGTTGTAGGTTCAGACTATAGTCGTAATGTTGAAATAGGCGTCACAGAAGTCACGGCACCGGAATTGGATAGGGAAGGAGAAAGTCCTTTGATGGAAATGATATCCCAAAATAAAAGTGATTTGGTGTCTAGTGATTTAGCGTTGGTTCCAGAAAGCGAGGAGGATGATACGTTATCGTTGGAAGGTGAACAGTTTATTGATAGTTCGTGTTCTTTATCGGTTGTCAGTGAGAACAGTAGTATAGGTGGAGAAGAGTTCATTGCTTCTGATGCTAATTCAGAAGTCGGGACACCGCGTTCGGTATACGTAGAGAAGACTGTTGGTCCTGTCAATATTGTTGCTCACGCTGCTGATTTGGGGGAGTCGAATGTTGACACGGATATTATGAGTGAATCCCTTGCAGTGGCAGTGAGTCTTGACCAAGAGATTGGAGTTGAGTCGGACCTAAAGCCTACTACAGTTGTTGTTGATCATCAGCTGCCTCAGGAAGAGGGAACGAGTGTAACAGTTGTCCGGAGTGTTTTTGATTTGGATTATACTCCGTTATGGGGATTCATATCGCTATGTGGAAGAAGGCCTGAAATGGAAGACGCATTTGCAACTGTTCCTCAATTCTTGAAGATTCCGATTCAGATGTTAATGGGTGATCGAGTACCTGATGGGATAAACCGATGTTTTAGGCCGCAGATGACTCATTTCTTCGGAGTATATGATGGCCATGGTGGTTCTCAGGTGGCAAATTATTGTCGGGAACGCATCCATATGGCCTTGGCTGAGGAAATAGAATTCGTCAAGGAAGGTTTAATTAATGGAAGTTCCGTGGAAAGTTGCCAAGATCAGTGGAAAAAAGCATTCACCAACTGTTTCTTAAAGGTTGATGCTGAAGTTGGAGGAACAGCTAATAATGAAGCTGTTGCGCCAGAAACCGTTGGTTCCACTGCAGTTGTTGCTCTAATATGTTCATCTCATATCATAGTTGCAAATTGTGGTGATTCAAGAGCCGTTCTTTGTCGAGGCAAAGAACCAATGGCTTTATCAGTGGACCATAAACCGAACCGAGAAGATGAATATGCTAGAATTGAAGCAGCGGGAGGAAAAGTGATTCAATGGAATGGTCATCGTGTATTTGGTGTTCTTGCAATGTCAAGGTCTATTGGTGACAGATATTTGAAACCGTGGATTATTCCGGAACCAGAAGTTCAATTCATTCCTCGTGCAAAAGAAGACGAATGTCTCATTCTAGCCAGCGACGGTCTATGGGATGTGATGACAAACGAAGAGGTCTGTGACCTAGCTCGAAAACGAATACTTCTTTGGTACAAGAAAAACAACTCAGAACTACCATCAGAAAGGGGGGAGACGAGTGATCCTGCCGCACAAGCAGCAGCAGAGTTCCTCTCGAACCGCGCTCTTCAGAAAGGAAGCAAAGACAACATAACCGTGATAGTCGTGGATCTGAAACCTCAACGAAAGTCTAAGAACAAGACATGA 1650 0.4364 MEELLYVVPVPLRVGNFVCDNSVLATHMDLSRFKVMSDAGSLSNSVTKVSTETVVGSDYSRNVEIGVTEVTAPELDREGESPLMEMISQNKSDLVSSDLALVPESEEDDTLSLEGEQFIDSSCSLSVVSENSSIGGEEFIASDANSEVGTPRSVYVEKTVGPVNIVAHAADLGESNVDTDIMSESLAVAVSLDQEIGVESDLKPTTVVVDHQLPQEEGTSVTVVRSVFDLDYTPLWGFISLCGRRPEMEDAFATVPQFLKIPIQMLMGDRVPDGINRCFRPQMTHFFGVYDGHGGSQVANYCRERIHMALAEEIEFVKEGLINGSSVESCQDQWKKAFTNCFLKVDAEVGGTANNEAVAPETVGSTAVVALICSSHIIVANCGDSRAVLCRGKEPMALSVDHKPNREDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVQFIPRAKEDECLILASDGLWDVMTNEEVCDLARKRILLWYKKNNSELPSERGETSDPAAQAAAEFLSNRALQKGSKDNITVIVVDLKPQRKSKNKT 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04664 549 SMART PP2C_4 221 537 IPR001932 -
Vifa3g04664 549 ProSitePatterns PPM-type phosphatase domain signature. 286 294 IPR000222 GO:0043169
Vifa3g04664 549 PANTHER PROTEIN PHOSPHATASE 179 539 IPR015655 GO:0004722|GO:0006470
Vifa3g04664 549 CDD PP2Cc 240 539 IPR001932 -
Vifa3g04664 549 SUPERFAMILY PP2C-like 222 541 IPR036457 -
Vifa3g04664 549 Pfam Protein phosphatase 2C 279 532 IPR001932 -
Vifa3g04664 549 Gene3D - 222 549 IPR036457 -
Vifa3g04664 549 FunFam Protein phosphatase 2C 16 223 549 - -
Vifa3g04664 549 ProSiteProfiles PPM-type phosphatase domain profile. 235 539 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04664 Vifa-Chr3 1338860753 1338862939 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04664 1 549 PP2C-type Phosphatase Gene Family AT1G17550 48.128 1.87e-164 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04664 K14497 - gmx:100805281 808.905