Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04657 ATGGCGTTTTACGGTCGCGTCAAATCCGGGATATCTCTTCTTTCTTCTCAGAGATCTACTCTTCAACGCTCCCTCATCGCGCCTTCCATTTCCCAGGCCTTCAGAAATTTTGCTCATGTGCCGGGGCAAAAGGAAACCAAAATTAAGGTCCCCATCGCAATGTTTGGAGGTTCAGGAAACTATGCCTCTGCTTTGTATATTGCAGCAGTGAAAGTTAATTCGGTCGACAAGGTTGACTCTGAGCTTCTTCAGTTTGTTGAGGGAGTAAAGGGTAGTCCCATAACCTCACAATTTATAAAGGATATATCTGTGGCTAAGGATGTTAGAGTAAAAGTCATCCAAGATATTGCCACCCAAGCTAAGTTCTCTGATGTCACAAAGAACTTCCTTGTTCTCCTTGCTGAGAATGGCAGACTTAAAAACGTAGATACCATTGCAAAGAGGTTTGCTGAGTTGGCAATGGCATATAAGGGAGAAGTGAAAGCAACCGTGACTACTGTCATTGCTCTTCCCCCTGAGGAGGAGAATGCATTGAAGCAGACTGTTCAGGAAATGCTAGGTTCCGGGGCAAAGGTTAAGCTTGAACAGAAGATTGATCCGAGCATACTTGGTGGTCTAGTGCTGGAGTTCAGCCAAAAAGTCTTTGACATGTCTATAAAGACTAGGGCACAACAGATGGAGAGGATCCTCCGGGAACCGGCAAACTATTCCATTTAG 717 0.4491 MAFYGRVKSGISLLSSQRSTLQRSLIAPSISQAFRNFAHVPGQKETKIKVPIAMFGGSGNYASALYIAAVKVNSVDKVDSELLQFVEGVKGSPITSQFIKDISVAKDVRVKVIQDIATQAKFSDVTKNFLVLLAENGRLKNVDTIAKRFAELAMAYKGEVKATVTTVIALPPEEENALKQTVQEMLGSGAKVKLEQKIDPSILGGLVLEFSQKVFDMSIKTRAQQMERILREPANYSI 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04657 238 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 192 211 IPR020781 GO:0015986|GO:0016020|GO:0046933
Vifa3g04657 238 PANTHER ATP SYNTHASE DELTA CHAIN 37 232 IPR000711 GO:0015986|GO:0046933
Vifa3g04657 238 Pfam ATP synthase delta (OSCP) subunit 59 230 IPR000711 GO:0015986|GO:0046933
Vifa3g04657 238 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 58 158 IPR026015 -
Vifa3g04657 238 Hamap ATP synthase subunit delta [atpD]. 53 232 IPR000711 GO:0015986|GO:0046933
Vifa3g04657 238 PRINTS ATP synthase delta subunit signature 57 76 IPR000711 GO:0015986|GO:0046933
Vifa3g04657 238 PRINTS ATP synthase delta subunit signature 205 223 IPR000711 GO:0015986|GO:0046933
Vifa3g04657 238 PRINTS ATP synthase delta subunit signature 138 152 IPR000711 GO:0015986|GO:0046933
Vifa3g04657 238 PRINTS ATP synthase delta subunit signature 127 138 IPR000711 GO:0015986|GO:0046933
Vifa3g04657 238 PRINTS ATP synthase delta subunit signature 190 205 IPR000711 GO:0015986|GO:0046933
Vifa3g04657 238 NCBIfam ATP synthase F1 subunit delta 60 230 IPR000711 GO:0015986|GO:0046933
Vifa3g04657 238 Gene3D - 57 150 IPR026015 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04657 Vifa-Chr3 1335976556 1335980422 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04657 97 237 Primary Pumps ATPases AT5G13450 59.574 7.64e-59 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04657 K02137 - gmx:100790990 362.844