Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04653 ATGGCTGGTTCTAATTCTACTAATATCATCGATGTTACCAATGATCACAACACATCTTGCTCCAACAATACCCCTACTAGTACTAATAATAACAAGTTGTACAAAGGTGTGAGGAAGAGAAAATGGGGAAAATGGGTATCTGAAATTAGGCTTCCAAATAGCCGTGAGAGAATATGGTTAGGATCATATGACACACAAGAGAAAGCTGCAAGAGCATTTGATGCAGCCCTTTATTGTCTACGTGGTCCTCAAGCTAGTTTCAATTTCCCTAATACACCTCTTACCATCAATGTAGCTGTTCATCATCATGGTGTTCCTCATGTTAACTCTCTTTCACCACAAGAGATTCAAGAGATTGCAGCTAGGTTTGCCAATGAGTACACACCACCAATTGAGTTGAGTACTACTCATGAAGAAGAAGAAGGAGATCAACAAGTACCATTGTTAGAGTCACAAAATAATGCAAATTCTAATTCTTACTCATGTCCTCTTTATGATAATGAGGGTGATTTGAGGAGGATGGATTGGACATTTGAGGATATGTTGGATGACATGAATGGAGTTGCTAATGGCTCTCATTTTGGTTATTATGGACTGGAAAAGATGCAATACTCGAGTGATATACAATATTCTAATCAACTTTTTGAGGAGGATAGTGTGGACCAAATTGAATGTGAAGATTCTTTTTCAAACCATTCCTTCCTTTGGAGTTGGAACTTTTGA 723 0.379 MAGSNSTNIIDVTNDHNTSCSNNTPTSTNNNKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTQEKAARAFDAALYCLRGPQASFNFPNTPLTINVAVHHHGVPHVNSLSPQEIQEIAARFANEYTPPIELSTTHEEEEGDQQVPLLESQNNANSNSYSCPLYDNEGDLRRMDWTFEDMLDDMNGVANGSHFGYYGLEKMQYSSDIQYSNQLFEEDSVDQIECEDSFSNHSFLWSWNF 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04653 240 FunFam Ethylene-responsive transcription factor 2 32 91 - -
Vifa3g04653 240 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Vifa3g04653 240 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 20 180 - -
Vifa3g04653 240 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Vifa3g04653 240 MobiDBLite consensus disorder prediction 1 32 - -
Vifa3g04653 240 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Vifa3g04653 240 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Vifa3g04653 240 CDD AP2 32 92 IPR001471 GO:0003700|GO:0006355
Vifa3g04653 240 SUPERFAMILY DNA-binding domain 33 90 IPR016177 GO:0003677
Vifa3g04653 240 Gene3D AP2/ERF domain 33 91 IPR036955 GO:0003700|GO:0006355
Vifa3g04653 240 Pfam AP2 domain 34 82 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04653 Vifa-Chr3 1333780195 1333780917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04653 34 194 AP2-EREBP Transcription Factor Family AT1G74930 53.012 2.92e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa3g04653 AP2 1.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04653 - - mtr:25481977 315.464