Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04642 ATGGCTACTAAGCTATGCGATTCCTGCAAGTCAACAAAGGCAACACTATTCTGCCGTTCTGACTCAGCTTTCCTCTGCATCACCTGTGATTCCAACATCCACGCCGCCAACAAACTCGCATCCCGCCACCACCGCGTCACACTCTGCGAAGTCTGTGAACAAGCTCCCGCTCACGTCACATGCAAAGCCGACGCCGCCGCTCTCTGCGTCTCCTGCGACCACGACATCCACTCCGCAAACCCCCTCGCTAGCCGCCACGAACGTATCCCGCTCAACACCTTCCACCACAGCAACAGCCAGCAACAATTCTTCTCCGATTCCGATCCAGATGCTGACGTCAGCACCGAAGAAGCCGAAGCTGCTTCCTGGCTCCTCCAAACTCCATCAAACCCTAAAGGCCCCGATCTAAACTCATCTCACTACTCATTCACCGAAATCAACGGTACCGACCTCAATTTCGTCTCCGTCGACGCTAAAACTGACTCGCCAGAGGAACATAGTCCCGGCACCGCAGACGGAGTCGTACCGGTGCAGTCTCATAGCAAAACCGTCACGGAACACTACTCCGATATAAACAACGATTTCTCTACTTCGAAACCTTTTACTTACAACTACAATCACAACGTATCGTCACCTTCGCTGGAGGTTGGAGTCGTACCAGACGGAAACGTGATGTCGGAGATATCGTACTGTGGTTACGGAAGCACGGCGGCGGTGCAAATCACGGCGGCGGATAGAGAAGCTAAGGTTATGAGGTACAGAGAGAAGAGAAAGAATAGAAGGTTCGCAAAACGCTCTGATTTGAATATGAATGTGAATCTAATCGCTGAGGATGAGTGTTATGATGGATACGGCGTCGTTCCTTCCTGTTGA 873 0.5189 MATKLCDSCKSTKATLFCRSDSAFLCITCDSNIHAANKLASRHHRVTLCEVCEQAPAHVTCKADAAALCVSCDHDIHSANPLASRHERIPLNTFHHSNSQQQFFSDSDPDADVSTEEAEAASWLLQTPSNPKGPDLNSSHYSFTEINGTDLNFVSVDAKTDSPEEHSPGTADGVVPVQSHSKTVTEHYSDINNDFSTSKPFTYNYNHNVSSPSLEVGVVPDGNVMSEISYCGYGSTAAVQITAADREAKVMRYREKRKNRRFAKRSDLNMNVNLIAEDECYDGYGVVPSC 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04642 290 CDD Bbox1_BBX-like 5 48 - -
Vifa3g04642 290 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Vifa3g04642 290 SMART bboxneu5 49 91 IPR000315 GO:0008270
Vifa3g04642 290 SMART bboxneu5 1 48 IPR000315 GO:0008270
Vifa3g04642 290 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Vifa3g04642 290 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 6 264 IPR045281 GO:0009909
Vifa3g04642 290 CDD Bbox1_BBX-like 48 91 - -
Vifa3g04642 290 Pfam B-box zinc finger 4 46 IPR000315 GO:0008270
Vifa3g04642 290 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04642 Vifa-Chr3 1331445142 1331446170 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04642 1 289 C2C2-CO-like Transcription Factor Family AT5G24930 45.777 6.56e-81 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vifa3g04642 zf-B_box 3.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04642 - - psat:127091607 541.576