Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04634 ATGGTTTGTGAGATGGAGAGGGATTGTATTGAAGACATGATGGAAATTGAAGTTTTACCATCAATGTGGCCAGAGGATGTTGGAACTGATGTTGGGAAACAGTTTAACATAGAGAAACCAGGAAGAGATCAAGATATGTTGGAAGAAGTAACAATCTTAGAAGAACCAGCTATAGCTGATTTTCAAAGATTAATGGAGCTTACAAATTATACAGAAAAAGGGTCATCTCAATTGGCCTATTTAATGAAACATTGGGAGTATAAGCAGGCCAACGCGGTTCGACTTCTCCGAGAAGAGCTCGACAATCTTAGTAAACAAAGGAAGGAAGTTGAGCTTAGAAAATTGGAGATACTTAAAGATAATAACCGGTTCCAGGAAGAGAGTTACGGTGGAGATAAACGTCCGATTTCGATATTGGACGATGTTTACTATACGTGGCAAGATCTACCGGTTGCAATAAGGAAAAGTGATGTTGTTGTACAAAATAAGAGAATTGAAATTGAGGCTGAGTATGATACTGTTGTTTACTGGAAACATCGGTCGCATGATTTGGAAAAACAGTTGGAGGCAAGTATTCGAAGAGAGGAGATATTAAAGGAGAAATTACAAGAAAGTATAGAGACTATTGAAAGACAATCTTCTCCTGTGGAGGAACTGTCACAGATTCTTAAGAGAGCAGATAATTTCTTACATTTTATACTTCAAAATGCACCTGTTGTTATTGGCCATCAGGACAAAGAGTTGCGCTACCGTTTTATCTATAATCATTTTCCAAGCTTACAAGAGGAGGACATCATAGGAAAAACGGATGTCGAAATTTTCACGGGATCAGGTGTTAAGGAATCTCAAGATTTCAAAAGAGAAGTAATGGAGAAAGGAGTAGCTGCAAAAAAAGAAATCACTTTTGAGACAGAACTATTTGGAGCCAAGACATTTTTGATATATGTAGAACCTGTGTTTAGCAAGACAGGTGAAACAATTGGAGTAAACTATATGGGAATGGAAATAACAGATCAGGTGAGAAAAAGAGAAAGAATGGCTAAGCTAAGGGAAGAAATTGCAGTTCAGAAAGCTAAGGAAACAGAACTTAATAAAACCATTCACATTACAGAGGAGACAATGAGAGCAAAACAAATGCTGGCAACAATGTCTCATGAGATAAGATCGCCACTTTCTGGTGTTGTTAGTATGGCTGAAATTCTTACTACAACAAAACTTGATAGGGAGCAAAGACAGCTATTGGATGTCATGATATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGACATACTTGATCTTTCCAAAGTCGAGTCAGGAGCTATGAAATTGGAAGCTACCAAATTCAGGCCAAGAGAGGTAGTAAGGCATGTACTCCAGACAGCTGCAGCATCATTGCAGAAAATGTTAACATTGGAAGGAGATATAGCAGATGATATACCTATTGAGGTCACTGGCGATGTTTTAAGGATTCGGCAAATTCTCACAAATTTAGTCAGCAATGCTGTCAAGTTTACGCATCAAGGCAAAGTTGGTATAAACCTTTACGTTGTTCCCGAGCCACCATTTGCAAAATCAGAAGAATGCCACCAAAAGGCGACAGAAGACCAATCAACTGTTTCTTCAAATGGGTTGAAGGAAGAGAAACATACATCATCACCAAGAAGTACTAGATGTGATCAAAATCTTATTGATGTTAAAAAACATTCTGGCCAACCAATCCAGAATCAAGCTTTTAACAATGAATGTAGTAGATCTTCAGCCAACAGTGAATGCTCAATGAATGACGATACTGAGGAGCAAACTCATTCATCTGAAACAACAGTGTGGATACGATGTGATGTATTTGACACAGGAATTGGCATACCAGAAAAGGCTATACCTACTTTATTTAGAAGGTACATGCAAGTCAGTGCAGACCATGCTCGAAAATACGGAGGCACTGGTCTAGGATTAGCAATATGTAAACAACTGGTTGAGTTAATGGGGGGTCGCCTGACAGTAACTAGCACAGAACATTGTGGTTCCACCTTCACATTCATACTACCATACAAGGTTTCAACAGCTTGTGATAATTCTGATGATCCAGATGACCTTTCGGATGTTGATAATAATGAAGACGACACAACCGAGGGATTCTTCCAATTCCAACCGCGAACTTTAGGTTCGCTTTTCACTTCTAATGGATCCACCAGGCCACACAGAATCTCACACAAGTTCAATGGTTTTCCAGACAACAACTCTTACTCAAACCTCTCTAATAACATCATTTCAAATGGAACAAATTCAGTTGAGGATGCATCTTCGGTTATTGTTAATGCTTCAGATATGTTGGAATCAACAAGTTCATCAAGTCACAGCTCAGAAACAAAGCATGAATGTTTAGTTAATGGAAACAAACAAAATCATGATAACAATAAGGCACATGCTATGTTAGAAAATGGTACTGCATACTCTAGTCAATGTAAGGAAGCAGGTAGAGAAATGAACTTAGAAACAAAGTCAAGAGGACCACAGCAAACATGTCAAGGTCAAGGGAAGGAAGATAGTACTAGTAGCACTAGCACATCAGCAGAAGTAACCAAATCGACGTTAAAGCCGAATATTCTTCTTGTTGAAGATAACAAGATTAATATCATGGTGACAAAGTCAATGATGAAGCAGCTAGGATATAGCATGGATGTTGTGAATAATGGAGTTGAAGCCATACGCGAGATTCAACGCCATTCTTATGACATAATTTTGATGGATGTTTACATGCCAGTTATGAATGGTCTTCAAACAACAAAACTGATTAGGTCTTATGAGGAAACAGGCAATTGGGATGCTGCAAGAGAAGCTGGAATTGAACAAAGTTTGTCTGCTTCAGATAATCGTGCTGTACCACCTAAAAAGAGGATCCACATTGTGGCGATGACAGCAAATACAATGTCAGAGAGTGCTGAAGAATGTTTCGCCAATGGTATGGACGCGTTTGTGTCGAAACCAGTGACACTCCTAAAATTGAAAGAGTGTCTTGAAAAACATCTAAGGTGA 3036 0.3857 MVCEMERDCIEDMMEIEVLPSMWPEDVGTDVGKQFNIEKPGRDQDMLEEVTILEEPAIADFQRLMELTNYTEKGSSQLAYLMKHWEYKQANAVRLLREELDNLSKQRKEVELRKLEILKDNNRFQEESYGGDKRPISILDDVYYTWQDLPVAIRKSDVVVQNKRIEIEAEYDTVVYWKHRSHDLEKQLEASIRREEILKEKLQESIETIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGSGVKESQDFKREVMEKGVAAKKEITFETELFGAKTFLIYVEPVFSKTGETIGVNYMGMEITDQVRKRERMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILTTTKLDREQRQLLDVMISSGDLVLQLINDILDLSKVESGAMKLEATKFRPREVVRHVLQTAAASLQKMLTLEGDIADDIPIEVTGDVLRIRQILTNLVSNAVKFTHQGKVGINLYVVPEPPFAKSEECHQKATEDQSTVSSNGLKEEKHTSSPRSTRCDQNLIDVKKHSGQPIQNQAFNNECSRSSANSECSMNDDTEEQTHSSETTVWIRCDVFDTGIGIPEKAIPTLFRRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSTEHCGSTFTFILPYKVSTACDNSDDPDDLSDVDNNEDDTTEGFFQFQPRTLGSLFTSNGSTRPHRISHKFNGFPDNNSYSNLSNNIISNGTNSVEDASSVIVNASDMLESTSSSSHSSETKHECLVNGNKQNHDNNKAHAMLENGTAYSSQCKEAGREMNLETKSRGPQQTCQGQGKEDSTSSTSTSAEVTKSTLKPNILLVEDNKINIMVTKSMMKQLGYSMDVVNNGVEAIREIQRHSYDIILMDVYMPVMNGLQTTKLIRSYEETGNWDAAREAGIEQSLSASDNRAVPPKKRIHIVAMTANTMSESAEECFANGMDAFVSKPVTLLKLKECLEKHLR 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04634 1011 FunFam Histidine kinase 5 217 352 - -
Vifa3g04634 1011 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 486 684 IPR003594 -
Vifa3g04634 1011 PRINTS Bacterial sensor protein C-terminal signature 670 683 IPR004358 GO:0016310|GO:0016772
Vifa3g04634 1011 PRINTS Bacterial sensor protein C-terminal signature 611 625 IPR004358 GO:0016310|GO:0016772
Vifa3g04634 1011 PRINTS Bacterial sensor protein C-terminal signature 646 664 IPR004358 GO:0016310|GO:0016772
Vifa3g04634 1011 CDD HATPase_EvgS-ArcB-TorS-like 491 683 - -
Vifa3g04634 1011 SMART HisKA_10 375 440 IPR003661 GO:0000155|GO:0007165
Vifa3g04634 1011 Coils Coil 346 366 - -
Vifa3g04634 1011 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 8 1010 - -
Vifa3g04634 1011 Gene3D PAS domain 216 352 - -
Vifa3g04634 1011 FunFam Histidine kinase 5 861 1011 - -
Vifa3g04634 1011 Gene3D - 441 690 IPR036890 -
Vifa3g04634 1011 MobiDBLite consensus disorder prediction 833 862 - -
Vifa3g04634 1011 ProSiteProfiles Response regulatory domain profile. 868 1010 IPR001789 GO:0000160
Vifa3g04634 1011 MobiDBLite consensus disorder prediction 527 559 - -
Vifa3g04634 1011 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 454 683 IPR036890 -
Vifa3g04634 1011 FunFam Putative histidine kinase 5 363 440 - -
Vifa3g04634 1011 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 374 440 IPR036097 GO:0000155|GO:0007165
Vifa3g04634 1011 SMART HKATPase_4 486 686 IPR003594 -
Vifa3g04634 1011 CDD HisKA 377 436 IPR003661 GO:0000155|GO:0007165
Vifa3g04634 1011 Gene3D - 363 440 - -
Vifa3g04634 1011 MobiDBLite consensus disorder prediction 575 603 - -
Vifa3g04634 1011 MobiDBLite consensus disorder prediction 827 862 - -
Vifa3g04634 1011 ProSiteProfiles Histidine kinase domain profile. 382 686 IPR005467 -
Vifa3g04634 1011 Pfam His Kinase A (phospho-acceptor) domain 377 440 IPR003661 GO:0000155|GO:0007165
Vifa3g04634 1011 Coils Coil 181 212 - -
Vifa3g04634 1011 Pfam Response regulator receiver domain 869 937 IPR001789 GO:0000160
Vifa3g04634 1011 CDD REC_hyHK_CKI1_RcsC-like 869 1006 - -
Vifa3g04634 1011 SUPERFAMILY CheY-like 867 1011 IPR011006 -
Vifa3g04634 1011 SMART REC_2 867 1006 IPR001789 GO:0000160
Vifa3g04634 1011 Gene3D - 861 1011 - -
Vifa3g04634 1011 FunFam Probable histidine kinase 1 566 689 - -
Vifa3g04634 1011 Coils Coil 93 120 - -
Vifa3g04634 1011 MobiDBLite consensus disorder prediction 575 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04634 Vifa-Chr3 1329197116 1329202237 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04634 1 547 Histidine Kinase Gene Family AT5G10720 66.909 0.0 720
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa3g04634 HATPase_c 7.2e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04634 - - cam:101512841 1677.14