Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04633 ATGGGCTACCTCAATTCTGTTTTGTCTTCTTCAAGTCAGGTTCATGCTGCTGATGATTCACCTGTTAGTGGTGGAGGGCTCAGTCAGAATGGAAAGTTCAGCTATGGATATGCTAGCTCCCCAGGCAAGAGATCTTCAATGGAAGATTTTTATGAGACAAGAATTGATGGCGTTGATGGTGAAGTTGTTGGTCTTTTTGGAGTTTTTGATGGTCACGGTGGCGCTCGTGCTGCAGAGTATGTCAAGCAAAACCTATTTAGCAATTTGATCAGTCACCCAAAGTTCATTTCTGACACCAAATCTGCAATAGCTGATGCATATACGCATACCGACTCTGAATTTCTGAAATCAGAAAATAACCAAAACAGAGATGCTGGATCTACCGCTTCCACTGCCATTCTTGTTGGTGATCGTTTGCTTGTTGCAAATGTCGGAGACTCTAGAGCTGTTATTTGCAGGGGTGGAAATGCAATTGCTGTGTCCCGAGATCACAAACCAGATCAAACTGATGAGAGGCAAAGGATAGAAGATGCCGGGGGTTTCGTTATGTGGGCTGGAACTTGGAGAGTTGGTGGCGTTCTTGCTGTTTCTCGCGCATTTGGTGATAGACTCCTTAAGCAATATGTTGTTGCTGATCCAGAAATTCAGGAAGAAAAAGTTGATAGCTCTCTCGAGTTTCTTATATTGGCTAGTGACGGACTATGGGATGTTGTCTCTAACGAGGAAGCTGTTGCCATGATTAAACCAATCGAGGATGCAGAGGTGGCAGCAAAGAGGCTGATGAAAGAAGCGTATCAGAGAGGTAGTTCTGACAACATTACTTGTGTTGTTGTTCGTTTCCTGATGAACAACCAAGGTTCTTCATCTCGTAATAGCTCTGGCTAA 885 0.4395 MGYLNSVLSSSSQVHAADDSPVSGGGLSQNGKFSYGYASSPGKRSSMEDFYETRIDGVDGEVVGLFGVFDGHGGARAAEYVKQNLFSNLISHPKFISDTKSAIADAYTHTDSEFLKSENNQNRDAGSTASTAILVGDRLLVANVGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVADPEIQEEKVDSSLEFLILASDGLWDVVSNEEAVAMIKPIEDAEVAAKRLMKEAYQRGSSDNITCVVVRFLMNNQGSSSRNSSG 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04633 294 SMART PP2C_SIG_2 29 280 IPR001932 -
Vifa3g04633 294 Gene3D - 26 285 IPR036457 -
Vifa3g04633 294 Pfam Protein phosphatase 2C 62 273 IPR001932 -
Vifa3g04633 294 CDD PP2Cc 33 280 IPR001932 -
Vifa3g04633 294 FunFam probable protein phosphatase 2C 59 26 284 - -
Vifa3g04633 294 ProSitePatterns PPM-type phosphatase domain signature. 65 73 IPR000222 GO:0043169
Vifa3g04633 294 ProSiteProfiles PPM-type phosphatase domain profile. 34 280 IPR001932 -
Vifa3g04633 294 SMART PP2C_4 24 278 IPR001932 -
Vifa3g04633 294 SUPERFAMILY PP2C-like 28 280 IPR036457 -
Vifa3g04633 294 PANTHER PROTEIN PHOSPHATASE 27 279 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04633 Vifa-Chr3 1328081044 1328084350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04633 1 291 PP2C-type Phosphatase Gene Family AT4G31750 90.476 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04633 K17506 - gmx:547661 544.658