Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04620 ATGGAGTCAACGTGCATCGATACTTCACTCAATCTTAGCAACCTCAATCTTCCTTCCACATACAAGGACGAAGTTTTGGTCGAAGAGTTACATCGTCTGAGTTGCGAGAACAGAAGACTAAGTGAAACATTGACAAACATGTGTGAGAGTTATGAAGCTATGCAAAAGCAATTGAGCCAATTGATAATGAAACAAAATCTTGAAAACCAAACACAAAGGAAGAGAAAATTTGAGAGTGAAAGTTGCATGAATATGTTTGGTGGTGTTAGAGAGTGCAGCAATGTTAGTGATGAAGAATCATTGATGAAAAGACCTTGTAGAGATGTTTCATCACCAAAGGCTTATAAGGTTCTTGTGAAGACAGAAGCATCTAGTAATAGCTTGTATGTGATGGATGGATATCAATGGAGGAAATATGGTCAAAAGGTTACTAGAGATAATCCTTCTCCTAGAGCTTACTTTAGATGCTCCAAAGCTCCAAATTGCCCGGTTAAAAAGAAGGTGCAAAAAAGTTTAGAAGACCCAACTATACTAGTTGCAACATATGAAGGAGAGCACAACCATGATCATGAAAAAGCTGAAATATCAATGATATCAAGCCAATATGAAGAAGCCCGTTTAGGTTCAGTTCATGTTTCTTCACCTAAACAAATAATGGAAATGACTTCTCCAACCATGAGACTTAACTTGGTTGACAATGTTCCAAAATCATCTATCCAACAATTTTTGGTTCAACAAATGGCTACTTCTTTGACTAATGATCCCAATTTCACTACAGCACTTGCTAATGCTATTTCAGGAAGAATTATAGGCAATGCTTCTAATAAAGCTAGATTTTGA 840 0.3667 MESTCIDTSLNLSNLNLPSTYKDEVLVEELHRLSCENRRLSETLTNMCESYEAMQKQLSQLIMKQNLENQTQRKRKFESESCMNMFGGVRECSNVSDEESLMKRPCRDVSSPKAYKVLVKTEASSNSLYVMDGYQWRKYGQKVTRDNPSPRAYFRCSKAPNCPVKKKVQKSLEDPTILVATYEGEHNHDHEKAEISMISSQYEEARLGSVHVSSPKQIMEMTSPTMRLNLVDNVPKSSIQQFLVQQMATSLTNDPNFTTALANAISGRIIGNASNKARF 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04620 279 Pfam WRKY DNA -binding domain 132 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa3g04620 279 ProSiteProfiles WRKY domain profile. 125 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa3g04620 279 SMART WRKY_cls 130 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa3g04620 279 SUPERFAMILY WRKY DNA-binding domain 127 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa3g04620 279 Gene3D WRKY domain 114 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa3g04620 279 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 24 273 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04620 Vifa-Chr3 1322910563 1322912097 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04620 3 269 WRKY Transcription Factor Family AT1G80840 42.230 1.13e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa3g04620 WRKY 1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04620 - - gmx:100810978 301.982