Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04619 ATGGATGAAAAGGTGGAAACTCTTGAATTGGAGTTACAACAAGTGAGAGAGGAGAATAATACTCTAAGATTCATGCTTGAAGTTATGAGTAAGAAGTGCACAAGTTTAAAACAAGAGATCAACAAAGAAGAAAACAAAGAGATCATAAGTTCAAATCAAATTGGGCTATCACCTAACTTTGATACAAGCAAAAGAGCAAGACTAGAGTACTTTCCAACAGCCAAAAAACCATTACAAGTATTTGTCAAAACTCATCCTAATGATGAGAGTTTGATAATAAAAGATGGTTATCAATGGAGAAAGTATGGACAAAAAGTTACCAAAGATAATGCCTCTCCTAGAGCTTACTTTAGGTGCTCTATGGCCCCTAATTGCCCAGCCAAAAAGAAGGTACAAAAATGCTTACATGATAAATCTATCATTGTTGCAACTTATGATGGAGAACACAACCATGGTGTCTCTAATGAGCCATTCAAACCATCTTCATCCACACTAAATGACCGAGAAGCCATAAACACTAGACTTTGTGAGGATGTCATGCAACCGTTTGGCTATGAAAAGAACGTGAAATTTGAAGAATATGTGAATTCGCTAATCCAAGCTCCTAACTTCACAGCGGTATTAGTTAAAGCTGTTGCCAAAAGTATTATTGGTCAACAGCATAAGCGACAAAGTCTAAATCTCAATTTGAATTTTTCAGAGAATGAAAGAAATGATACTTCTTCATAA 729 0.3553 MDEKVETLELELQQVREENNTLRFMLEVMSKKCTSLKQEINKEENKEIISSNQIGLSPNFDTSKRARLEYFPTAKKPLQVFVKTHPNDESLIIKDGYQWRKYGQKVTKDNASPRAYFRCSMAPNCPAKKKVQKCLHDKSIIVATYDGEHNHGVSNEPFKPSSSTLNDREAINTRLCEDVMQPFGYEKNVKFEEYVNSLIQAPNFTAVLVKAVAKSIIGQQHKRQSLNLNLNFSENERNDTSS 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04619 242 SMART WRKY_cls 93 153 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa3g04619 242 Coils Coil 5 46 - -
Vifa3g04619 242 Pfam WRKY DNA -binding domain 94 151 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa3g04619 242 Gene3D WRKY domain 79 154 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa3g04619 242 ProSiteProfiles WRKY domain profile. 88 154 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa3g04619 242 SUPERFAMILY WRKY DNA-binding domain 89 153 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa3g04619 242 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 5 153 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04619 Vifa-Chr3 1322598316 1322599310 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04619 2 221 WRKY Transcription Factor Family AT1G80840 33.455 9.74e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa3g04619 WRKY 1.2e-22 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04619 3 1322598316 1322599310 Vifa2g03922 2 1144444282 1144445238 PCT