Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04618 ATGGCTTTGTTCCGCAAGTTCTTTTATAAGAAACCCCCTGATGGCCTTCTTGAAATCACTGAAAGGGTTTATGTGTTTGATTACTGTTTTACGACGGAAGTTATGGACGAAAGCGAGTACAAAGGGTATATAGGAGGAATAATTAGGCAAATTGGCGAGCATTTCCCCGACGCTTCTTTTATGGTGTTCAACATGAGGGAAGGAGAGCACCAAAGTCATATATCGAACATTTTATGCGACTATGACATGACTGTGATGGACTATCCTAGACAGTATGAAGGTTGCCCGTTACTTACAATGGAAATGATTCATCATTTCTTGAGATCGGGTGAAAATTGGCTTCAACTCGGGCAACAAAATATTGTATTGATGCATTGCGAACGAGGGGAACAGAAAACGTTGGATATGATATATAAGCAAGCGCCTCGGGAACTTTTGCAGTTGATGTCACCGTTGAATCCCTTACCTTCACAATTGAGGTATCTTCAATACATATCAAGGAGAAATGTTGGTTCCGAATGGCCTCCTTTGGATAGGGCGCTTACGTTGGATTGTGTAATTATAAGACAAATTCCTAATATGGATGGAGACGGTGGTTGCCGTCCTATTTTTAGGATATACGGACAGGACCCTTTTATTCCCGCGGATCGGACTCCCAAAGTTCTCTTCTCTACTCCAAAAAAGAGCAAACTTGTTCGGTACTTTAAACAGGCTGATTGTGAACTTGTGAAGATTGACATACATTGTCATGTTCAAGGCGATGTTGTACTTGAGTGTATTAGTTTGGAAAGTGATTTGGAACGTGAACAAATGATGTTCCGTGTGATGTTTAATACAGCATTCATAAGATCAAATATTTTGATGCTCAACCGCGATGAAATCGACATGTTATGGAATGCTAAAGATCACTTCCCAAAAAATTTCAGAGTAGAGGTTCTTTTCTCAGATATGGATACTTCTTCGTCTTCTGTTATTTCAGTCGATCTTCCTCCTCCTCGTCTGGAGGAGAAAGAAGGTCTACCTGTTGAAGCATTTGATAAAGTTAAGGAAATTTTTAGCCATGTTGATTGGCTTGATCCGAAGACAGATGTAGCAAATATGCTCCAACAGATCACGTCATCGAATATCCTTCTTGAAAGATTGGACAGTGGAGCTTCTTCTGGTTCACCAAACACCGTGCTAAACGAGTCATTTTCCGGAAGATTAAAATTTGATTCCAAGACACAAAACGAAACGAGCAGTCTGAAATCTTCTGATCACGAGGAACTTCCGGAGTCTCCATTGCAGTCATCTGAAGATGCTACCGAGGAAAAAATGCTTGAACCGAAATTGTCATCAGAAGAGAAAATCAAGACTCCTGCGAGTTTAGGTCAAGCGGTCAAGCCTATTCCTTCATTTGATCTGTCAAAAGATTCAGTTTCTGCTAAAATCGAGACTGAATCATCAGAGTCAAAACAATCATTGAAAAAGGATCTCAAATTTCCTACTTCTACGGCTCAGGCGGAGCAATCTATCCCATTAAAAGAACCATCAATAGATGCAAAGTCAACGGAGAAAAAGAATGGATCGTTGGAATCTGAGGAAAAGAATATTGTCTCATTAGCATCAAAGGAGGCGGCGTTGAAAAAGGACGTCATGTTTCCTGCATCGGAATCTTCTACTGTTGCAACCCCGGTGAAAAATATTAGACTGCCGGGATCGGTTGCAACCCCGGTGAAAAATATTAGACTGCCGGGATCGAAAGAAAAGGAGGTTGAATCATTAGACTCAGAGGCTCGGTTGAAAAATGATAGCAGACCTAAAGTTGAACCAAAGACTCAGCCAAAAGTTTCAGTACCGTCGTTTGAATCATTTGGTGATGCTACCTTGGAAAAGAAGAAAGAACACTTAGATATAATTGATCAGGGGAAACAACATATTCCCTCAATTGGACTCCCAAAAGATTCAGATCTTACTGAATTGAAGATTGAATCGTTAAAATCAAAGGCACCGGTGGAAAATGATACCAAGTTTCCTATGTCTACGGCTCAAGGGAAACAATCTATTCCATTAGTTGAGCCATCTGCGAAAGCGAATTCATTGGAACAGACGATGGAGAAATTGAAGTCAAAGAAAAATGATACTGAATCACTAGAATCAAATGCTACCAAGTTTCCTATGCCTACGGCTCAAGGGAAACAATCTATTCCGTTAGATGAACCATCTGCGGAAGCGGATTCAGTGGAACAGACAATGGAGAAATTAAAGTCGAAGAAAAGGGATACCGAATCATTAGAATTGAAAGATACCAAGTTTCCTATGTCTACAGCTCAAGGGAAACAATCTATTCCGTTAGTTGAACCATCCGCGAAAGCGAATTCAATGGAACAGACGGTGGAGAAATTAAAGTCAAAGAAAAAGGATAATGAGTCATTTGAATCGAATGATACCAAGTTTCCTACGTCTACGGCTCAAGGGAAACAGTCTACTCCCTTGATTGCACCATCCACGGAAGCAGATTCAACGGAACAGACGATGGAGAAATTGAAGTCAAAGAAAAAGGATACTGAATCATTAGAATCGAAGTCATTGTTGGAAAATGATACCAAGTTTCCTATGTCTGTGGCTCTAGGGAGGCAATCTATTCCCTCGATTGAACCATCCACGGAATCAGATTCAACGAAACAGACGGTGGAGAAGTTAAAGTCAAAGAAAAAGGATACTGAATCATTAGAATCAAAGTCATTTTTGCAAAATGATACCAAGGGGGAACAATCAATTCTTGTAATTAAAAAGTCGATGGATTCAAGTTCAACGAAAACAATGATTGAAAAATCAGAATCCCCAGCGTTGTCGGAAAATGATATCAAGAGTCATATATCGATGGTTCATAAGAAACAAACTAGTCCCTTAGTTGAACCCGGCGTTGATGCAAAATCAATTAAAAAGAAGATTGATCCTCAAGAATTGCAGGTTTCTCTTCAGCTACCTACACAATCTAAAATAATTTCTCCAAGGATGCATCAAGCTATTCGACCAGCTTCAGCTTCAGCTTCTTATTCTTCTAGCTCACTGCTAGGTTCACCTGTAGCTATCTCAAGGTATCACAGTGCACCATCGGCTCTCGGAATAACAAGCGTGTTGCAAGATCATACACCAATGGATAGCAAAGAAGAACTCACTCATGCAGCGACGATATCTCCTCCTTCAGATTCAAAGGCGCCAAAATCTGTAGAGTCTTGTTCTACATGCATTCCTGCAGCATCAACATCCCCGGCATTGCTTCCATCTTTGCCGTTAAAGTCTTCAGTGGGTCCTCCTTCTGCTGTCGAAAAGACTATTAAGCCACTCGTCCCTATTCCTCCTCCACCTCCGCCGCCACCTCCTCAACAAGAACTTACTTCAAATTTGACGCAATCTACAATTACTGTCACACAATACAGTGAAAATTCAATGCACGATAAAAACCGGATACCATTGGCTCCTCCTCCTCCTCCTCCTTCTCCCCCTTCTTCGTCCCTCGCTGAAACATCTCTTTCCACTGTCAAAGATTCATCGAAAGGTCCTCCTCCCCCACCTCCACCACCATTTCTATCTTCAACTGCACAAACTTCATCGTCGTCAATACCTCCTCCTCCCGTTCCTCCTCCACAAAGTACAAACACGTCCATTTCTATGTCTGGCCCTCCTCCTCCACCTCCACCTCCAAGACAATCTGGCACGACACCATTAGCGCCACCACCACCTCCTCCTCCTATTTCTGCATCCCAAAATTCTCAGTCTAGAAGCCCTCCAAATGTTCCACCTCCACCTCCTTCTGCCAATGGGTTATCAAAACCTGGCAGTGCCTCACCACAGTCTCATGCAGTTCCCAGACCACCCGGAAATGCACCTCCGGCTCCCGGACCTCCTGGAAGCGTGCCTCCAATTCCCGGACCACCTTCTGGTGCATTTGGTGCAAAGGGACGTGGAATGTTGCGAGCTAATTCGAAAACTCAGACTAAAAGAAGCAACCTGAAACCTTACCATTGGTTAAAGTTAACAAGGGCCATGCACGGTAGCTTGTGGGCCGAGACTCAGAAACTCGATGAAGCTAGTAGGGCTCCAGAGTTCGACATGACAGAGCTTGAGAGTCTTTTTTCAGCTGCCACTCCGAGTTCTAATAATGATAAAGGAGGAAAATCAAATCGTCGTTCAGGGCAAAAACCCGACAAAGTTCAAATAATTGAACTCAGACGGGCGTATAACTGTGAAATTATGCTTACAAAAGTCAAAATTCCATTGCCTGATTTAATGAGTAATGTTCTCGCATTGGACGATTCCGTGTTATATGTTGATCAGGTTGAGAACCTTATAAAGTTCTGTCCGACTAAAGAAGAGATGGACCAGCTCAAGGCCTACACAGGAGATACGGAAAACTTGGGGAAGTGCGAACAGTTCTTTTTAGAACTAATGAAAGTTCCAAGAGTGGAAAGCAAGCTAAGAGTTTTCTGTTTTAAGATGCAATTCTGCTCCCAGGTTTCAGACCTCAAAAGGGACTTGAATATTGTAAATTCTGCATCCGAACAGATAAGAAATTCCATCAAATTGAAAAGAATCATGCAGACCATTCTTTCTCTTGGTAATGCTTTGAACCATGGAACCGCAAGAGGTGCTGCGGTTGGGTTTCGGTTAGATAGTCTTCTTAAACTCACTGATACACGAGCCCGAAACAACAAAATGACCCTCATGCATTATCTTTGTAAGGTGCTTGCTGAAAAGCTTCCGGAACTTTTAGATTTCCCTAAAGACCTAGTCAGTTTGGAGGCTTCAACCAAGCTACAATTGAAATATTTGGCAGAAGAAATGCAAGCTATTAGTAAAGGACTGGAGAAAGTAATTCAAGAACTGTCTGCATCAGAAAACGACGGGCCCGTGTCAGAATACTTCTGCCAGATTCTGAAAGAATTTCTTAGTCACGCGGAAGCTGAAGTGAGGTCTTTGGCTCAGCTTTATGCGAATGTGGGTCGAAATGCAGATGCATTGGCGCTATACTTCGGAGAAGATCCGGCACGTTGCCCGTTCGAACAAGTTGTATCTACACTGTTGAACTTTGTGAGGATGTTCATCCGAGCACACGACGAAAATTGCAAGCAGGTTGAATATGAAAAGAAGAAAGCAGATAAGGAAGCTGCAGAAAATGAAAAATTGAAGGTAGCTGCGAGAAACGAGTCTAAACCTATGATGAGGACCACCATCAAGAGCGGTGATGTTAAATAA 5238 0.4227 MALFRKFFYKKPPDGLLEITERVYVFDYCFTTEVMDESEYKGYIGGIIRQIGEHFPDASFMVFNMREGEHQSHISNILCDYDMTVMDYPRQYEGCPLLTMEMIHHFLRSGENWLQLGQQNIVLMHCERGEQKTLDMIYKQAPRELLQLMSPLNPLPSQLRYLQYISRRNVGSEWPPLDRALTLDCVIIRQIPNMDGDGGCRPIFRIYGQDPFIPADRTPKVLFSTPKKSKLVRYFKQADCELVKIDIHCHVQGDVVLECISLESDLEREQMMFRVMFNTAFIRSNILMLNRDEIDMLWNAKDHFPKNFRVEVLFSDMDTSSSSVISVDLPPPRLEEKEGLPVEAFDKVKEIFSHVDWLDPKTDVANMLQQITSSNILLERLDSGASSGSPNTVLNESFSGRLKFDSKTQNETSSLKSSDHEELPESPLQSSEDATEEKMLEPKLSSEEKIKTPASLGQAVKPIPSFDLSKDSVSAKIETESSESKQSLKKDLKFPTSTAQAEQSIPLKEPSIDAKSTEKKNGSLESEEKNIVSLASKEAALKKDVMFPASESSTVATPVKNIRLPGSVATPVKNIRLPGSKEKEVESLDSEARLKNDSRPKVEPKTQPKVSVPSFESFGDATLEKKKEHLDIIDQGKQHIPSIGLPKDSDLTELKIESLKSKAPVENDTKFPMSTAQGKQSIPLVEPSAKANSLEQTMEKLKSKKNDTESLESNATKFPMPTAQGKQSIPLDEPSAEADSVEQTMEKLKSKKRDTESLELKDTKFPMSTAQGKQSIPLVEPSAKANSMEQTVEKLKSKKKDNESFESNDTKFPTSTAQGKQSTPLIAPSTEADSTEQTMEKLKSKKKDTESLESKSLLENDTKFPMSVALGRQSIPSIEPSTESDSTKQTVEKLKSKKKDTESLESKSFLQNDTKGEQSILVIKKSMDSSSTKTMIEKSESPALSENDIKSHISMVHKKQTSPLVEPGVDAKSIKKKIDPQELQVSLQLPTQSKIISPRMHQAIRPASASASYSSSSLLGSPVAISRYHSAPSALGITSVLQDHTPMDSKEELTHAATISPPSDSKAPKSVESCSTCIPAASTSPALLPSLPLKSSVGPPSAVEKTIKPLVPIPPPPPPPPPQQELTSNLTQSTITVTQYSENSMHDKNRIPLAPPPPPPSPPSSSLAETSLSTVKDSSKGPPPPPPPPFLSSTAQTSSSSIPPPPVPPPQSTNTSISMSGPPPPPPPPRQSGTTPLAPPPPPPPISASQNSQSRSPPNVPPPPPSANGLSKPGSASPQSHAVPRPPGNAPPAPGPPGSVPPIPGPPSGAFGAKGRGMLRANSKTQTKRSNLKPYHWLKLTRAMHGSLWAETQKLDEASRAPEFDMTELESLFSAATPSSNNDKGGKSNRRSGQKPDKVQIIELRRAYNCEIMLTKVKIPLPDLMSNVLALDDSVLYVDQVENLIKFCPTKEEMDQLKAYTGDTENLGKCEQFFLELMKVPRVESKLRVFCFKMQFCSQVSDLKRDLNIVNSASEQIRNSIKLKRIMQTILSLGNALNHGTARGAAVGFRLDSLLKLTDTRARNNKMTLMHYLCKVLAEKLPELLDFPKDLVSLEASTKLQLKYLAEEMQAISKGLEKVIQELSASENDGPVSEYFCQILKEFLSHAEAEVRSLAQLYANVGRNADALALYFGEDPARCPFEQVVSTLLNFVRMFIRAHDENCKQVEYEKKKADKEAAENEKLKVAARNESKPMMRTTIKSGDVK 1745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04618 1745 MobiDBLite consensus disorder prediction 512 526 - -
Vifa3g04618 1745 MobiDBLite consensus disorder prediction 1056 1083 - -
Vifa3g04618 1745 MobiDBLite consensus disorder prediction 404 465 - -
Vifa3g04618 1745 Coils Coil 524 544 - -
Vifa3g04618 1745 Coils Coil 738 761 - -
Vifa3g04618 1745 MobiDBLite consensus disorder prediction 577 604 - -
Vifa3g04618 1745 MobiDBLite consensus disorder prediction 1151 1165 - -
Vifa3g04618 1745 Gene3D - 175 320 - -
Vifa3g04618 1745 MobiDBLite consensus disorder prediction 491 505 - -
Vifa3g04618 1745 Gene3D Protein tyrosine phosphatase superfamily 14 170 IPR029021 -
Vifa3g04618 1745 SMART PTEN_C2_2 176 316 IPR014020 -
Vifa3g04618 1745 MobiDBLite consensus disorder prediction 1284 1308 - -
Vifa3g04618 1745 Gene3D Formin, FH2 domain 1341 1734 IPR042201 -
Vifa3g04618 1745 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1322 1721 IPR015425 -
Vifa3g04618 1745 MobiDBLite consensus disorder prediction 1047 1316 - -
Vifa3g04618 1745 Coils Coil 788 808 - -
Vifa3g04618 1745 MobiDBLite consensus disorder prediction 1126 1146 - -
Vifa3g04618 1745 ProSiteProfiles C2 tensin-type domain profile. 178 317 IPR014020 -
Vifa3g04618 1745 MobiDBLite consensus disorder prediction 414 448 - -
Vifa3g04618 1745 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 166 IPR029021 -
Vifa3g04618 1745 MobiDBLite consensus disorder prediction 1373 1396 - -
Vifa3g04618 1745 MobiDBLite consensus disorder prediction 886 906 - -
Vifa3g04618 1745 MobiDBLite consensus disorder prediction 808 835 - -
Vifa3g04618 1745 Pfam Formin Homology 2 Domain 1324 1695 IPR015425 -
Vifa3g04618 1745 MobiDBLite consensus disorder prediction 762 790 - -
Vifa3g04618 1745 MobiDBLite consensus disorder prediction 659 980 - -
Vifa3g04618 1745 Coils Coil 1696 1730 - -
Vifa3g04618 1745 SMART it6_source 1108 1743 IPR015425 -
Vifa3g04618 1745 MobiDBLite consensus disorder prediction 1373 1387 - -
Vifa3g04618 1745 MobiDBLite consensus disorder prediction 697 711 - -
Vifa3g04618 1745 MobiDBLite consensus disorder prediction 668 696 - -
Vifa3g04618 1745 MobiDBLite consensus disorder prediction 477 529 - -
Vifa3g04618 1745 MobiDBLite consensus disorder prediction 907 941 - -
Vifa3g04618 1745 Coils Coil 832 852 - -
Vifa3g04618 1745 Pfam C2 domain of PTEN tumour-suppressor protein 179 315 IPR014020 -
Vifa3g04618 1745 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1240 1714 - -
Vifa3g04618 1745 Coils Coil 691 714 - -
Vifa3g04618 1745 MobiDBLite consensus disorder prediction 791 807 - -
Vifa3g04618 1745 MobiDBLite consensus disorder prediction 1109 1125 - -
Vifa3g04618 1745 MobiDBLite consensus disorder prediction 573 616 - -
Vifa3g04618 1745 MobiDBLite consensus disorder prediction 1219 1248 - -
Vifa3g04618 1745 MobiDBLite consensus disorder prediction 836 857 - -
Vifa3g04618 1745 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 180 317 IPR035892 -
Vifa3g04618 1745 MobiDBLite consensus disorder prediction 740 761 - -
Vifa3g04618 1745 PANTHER FORMIN-J 831 1724 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04618 Vifa-Chr3 1322551022 1322558266 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04618 1 385 FH2 protein (formin) Gene Family AT2G25050 65.356 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04618 - - psat:127091021 2644