Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04599 ATGGGAACAAATCTCAGCATTCCCAGAACTGAAAAGTTCTCTGAAGATGGTGAAAATGACAATCTTAGATATGGATTATCATCTATGCAAGGTTGGCGTGCAACAATGGAAGATGCACACGCTGCTCATCTTGATGTGGATTCATCCACTTCGTTTTTTGGAGTTTATGATGGTCATGGAGGCAAGGCAGTTGCAAAGTTTTGTGCCAAGTATCTTCACCAACAGGTACTCAAGAGTGAAGAATACATAGCTGGAGATGTTGGAACATCTCTTCAGAAAGCATTTTTCAGAATGGACGAGATGATGCGTGGTCAAAGGGGGTGGAGGGAATTAGCAGTCTTGGGTGATAAGGTAAAAGGATTCAATGGAATGATTGAAGGATTGATTCGGTCTCCAAGAAGCAGTGATAATAATAAGGACCAAAATGATGATTGGGGATTTGAGAAGGGGCCTCATTCTGATTTTGATGGACCAACTTCAGGAAGTACTGCCTGTGTCGCAATCATTAGAAACAACCTAATTTTTGTCGCAAATGCCGGCGATTCTCGCTGCATAATATCTAGGAATGGCCAGGCTTACAATTTGTCTAGAGACCACAAACCAGAACTTGCGATTGAGAAGGAAAGAATCTATAAAGCTGGAGGTTTTATTCACGCTGGACGAGTTAATGGGAGTTTAAATCTAGCAAGAGCTATAGGTGACGTGGACTTCAAGAATAATAGATTTCTTTCTGCTGAAAAACAAGTTGTCACCGCCAATCCAGACATAAACATTGTTGACCTTCATGATGAAGATGAATTTATAGTGATAGCTTGTGATGGCATATGGGATTGCCTGTCAAGCCAGCAATTGGTAGATTTTGTACGTCAAGAACTTCTCTCGGATACCAAACTTTCTGAGGTTTGTGAAAGAGTCCTTGACCGGTGTTTGGCGCCATCTTTGGCTATGGGTGACGGATGCGATAACATGACAATGATCTTGGTACAGTTCAAAAAACCAGTGCAGACAAGCGCAGCAGCGCAAGAACAATCGTCTTCAAATGAACAAGGTGCATCTGAGCCATGA 1065 0.4216 MGTNLSIPRTEKFSEDGENDNLRYGLSSMQGWRATMEDAHAAHLDVDSSTSFFGVYDGHGGKAVAKFCAKYLHQQVLKSEEYIAGDVGTSLQKAFFRMDEMMRGQRGWRELAVLGDKVKGFNGMIEGLIRSPRSSDNNKDQNDDWGFEKGPHSDFDGPTSGSTACVAIIRNNLIFVANAGDSRCIISRNGQAYNLSRDHKPELAIEKERIYKAGGFIHAGRVNGSLNLARAIGDVDFKNNRFLSAEKQVVTANPDINIVDLHDEDEFIVIACDGIWDCLSSQQLVDFVRQELLSDTKLSEVCERVLDRCLAPSLAMGDGCDNMTMILVQFKKPVQTSAAAQEQSSSNEQGASEP 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04599 354 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Vifa3g04599 354 MobiDBLite consensus disorder prediction 129 157 - -
Vifa3g04599 354 MobiDBLite consensus disorder prediction 136 151 - -
Vifa3g04599 354 ProSiteProfiles PPM-type phosphatase domain profile. 23 330 IPR001932 -
Vifa3g04599 354 Pfam Protein phosphatase 2C 156 312 IPR001932 -
Vifa3g04599 354 Pfam Protein phosphatase 2C 23 103 IPR001932 -
Vifa3g04599 354 CDD PP2Cc 23 330 IPR001932 -
Vifa3g04599 354 Gene3D - 1 331 IPR036457 -
Vifa3g04599 354 SMART PP2C_4 13 328 IPR001932 -
Vifa3g04599 354 PANTHER PROTEIN PHOSPHATASE 2C 22 329 IPR015655 GO:0004722|GO:0006470
Vifa3g04599 354 SUPERFAMILY PP2C-like 4 331 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04599 Vifa-Chr3 1317425083 1317427828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04599 1 333 PP2C-type Phosphatase Gene Family AT2G25070 74.174 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04599 K17499 - sind:105164872 571.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04599 3 1317425083 1317427828 Vifa3g04599 3 1317425083 1317427828 ECH
Vifa3g04599 3 1317425083 1317427828 Vifa2g03910 2 1141361231 1141366263 PCT