Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04596 ATGTTGAACTCTCCTTCATCTTGTTCTTCTTCAAACATCATTCTTATTCTTTCACTACTCTTGTTCACACTTCCAAAAACAAACTCACTTTTCTTCAACATAACAAACTTCGACGACCCAACAGCCGCAAACAACATCTCATACCAAGGTGATGGAATGTCAACCAACGGTTCCATCGATCTCAACAAAGTAAGTTACCTTTTTCGTGTAGGAAGAGCAATCTATTCACAGCCTTTACATTTATGGGACAAAAACACAAAAACTCTTACTAGTTTTACTACAAGTTTCACTTTTACTATTGATAAAGTTAATGATACAACCTATGGTGATGGTTTTGTGTTTTATGTGGCTCCATTGGGTTATCAGATTCCACCTAATTCAGCTGGTGGTGTTTTTGGTCTTTTTAATGCTACTACTAATAGTAATGCTCTTATGAATTATGTTGTTGCTGTTGAGTTTGATACTTTTGTTGGGGCTACGGATCCACCAATGAGACATGTTGGTATTGATGATAATTCTTTGACTTCTGTTGCATTTGGAAAGTTTGATATTGATAATAATCTTGGTAAGATTTGTTATGTTTTGATTGATTATAGTTCTGATAACAAGATGTTGGAAGTGTTTTGGTCTTTTCATGGAAGGATTGTTAAAGGTGTTGGAAATGGGAATTCTTCACTGTCTTATCAGATTGATCTTATGCAGAAACTGCCTGAGTATGTGAATATTGGATTTTCGGCTTCGACGGGTCTTTCGACAGAAAGTAATGTTATTCATTCTTGGGAGTTTAGTTCGAATTTGAAGTCGGATTCGTCGGAAGATGTTCTGTTGGAGGGAAATGGAAGTAAAGGGTCGTTGAAAACGGTTGTGATTGTTGTTGCTGTCATTGTTCCGGTTATTTTGGTACTTTTGATAGCTAGTGTTGTTGGTTGGTTGATAGTGAAGAGGAAAAGGAAGAATGTTGATGAAGGGCTAGATGAATATGGAATACCTGTTTCGGCGAAATTTGATTTGGATAAAGCGACAATACCGAGAAGATTTGAGTATAGCGAATTAGTTGCAGCTACTAATGGTTTTGCTGATGATAGAATGCTTGGAAGAGGAGGGTATGGACAAGTTTACAAAGGTGCTTTGAGTTATTTAGGAAGAGTTGTTGCTGTGAAGAGGATTTTCGCCGATTTCGAGAATTCAGAAAGAGTTTTCATCAATGAGGTAAGGATTATAAGCCGTTTGATACATAGAAATTTGGTTCAATTCATCGGTTGGTGTCATGAAGAAGGTGAGTTTCTCTTAGTTTTTGAGTACATGCCTAATGGAAGCCTCGACACATTTTTATTTGGTGACAAGAAAAGTTTGGCTTGGGAAGTAAGGTACAGAATTGCATTAGGTGTCGCGAATGCGCTTCGTTATCTTCACGACGACGCCGAGCAATGTGTTCTTCACAGAGACATCAAATCAGCTAATGTTTTGTTGGACACTGATTTCAGCACGAAACTCGGTGATTTCGGGATGGCGAAACTGGTTGATCCTGTGTTGAGGACACAGAGAACAGGTGTAGTTGGAACATATGGTTATCTAGCACCTGAATATATCAATGGTGGAAGGGCTAGTAAAGAGTCTGATATGTATAGTTTTGGAATTGTTGCTTTGGAGTTAGCAACTGGGAGAAGGATTTTTCAAAATGGGTTATGGTGTACTCACTCAAATGATAAAGAAAGACCCAAGGCTTATGAAGTTATTAAGGTTCTTCAAAATGAAATGGCATTACCTGAACTTCCACTTGATATGCATGATCGCGCTCCTCCTATTGTAGCCTTTAGGCCGCCACCATCCAAGGCTTCCTCATTGTCACCAAATATGACTAACAGTCTTGTTTGCGATGGACGTTAG 1887 0.3842 MLNSPSSCSSSNIILILSLLLFTLPKTNSLFFNITNFDDPTAANNISYQGDGMSTNGSIDLNKVSYLFRVGRAIYSQPLHLWDKNTKTLTSFTTSFTFTIDKVNDTTYGDGFVFYVAPLGYQIPPNSAGGVFGLFNATTNSNALMNYVVAVEFDTFVGATDPPMRHVGIDDNSLTSVAFGKFDIDNNLGKICYVLIDYSSDNKMLEVFWSFHGRIVKGVGNGNSSLSYQIDLMQKLPEYVNIGFSASTGLSTESNVIHSWEFSSNLKSDSSEDVLLEGNGSKGSLKTVVIVVAVIVPVILVLLIASVVGWLIVKRKRKNVDEGLDEYGIPVSAKFDLDKATIPRRFEYSELVAATNGFADDRMLGRGGYGQVYKGALSYLGRVVAVKRIFADFENSERVFINEVRIISRLIHRNLVQFIGWCHEEGEFLLVFEYMPNGSLDTFLFGDKKSLAWEVRYRIALGVANALRYLHDDAEQCVLHRDIKSANVLLDTDFSTKLGDFGMAKLVDPVLRTQRTGVVGTYGYLAPEYINGGRASKESDMYSFGIVALELATGRRIFQNGLWCTHSNDKERPKAYEVIKVLQNEMALPELPLDMHDRAPPIVAFRPPPSKASSLSPNMTNSLVCDGR 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04596 628 FunFam L-type lectin-domain containing receptor kinase IX.1 343 434 - -
Vifa3g04596 628 SMART serkin_6 358 610 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04596 628 ProSiteProfiles Protein kinase domain profile. 358 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04596 628 SUPERFAMILY Concanavalin A-like lectins/glucanases 19 267 IPR013320 -
Vifa3g04596 628 Gene3D Transferase(Phosphotransferase) domain 1 435 599 - -
Vifa3g04596 628 Pfam Legume lectin domain 31 271 IPR001220 GO:0030246
Vifa3g04596 628 Pfam Protein kinase domain 359 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04596 628 SUPERFAMILY Protein kinase-like (PK-like) 344 610 IPR011009 -
Vifa3g04596 628 Gene3D - 27 277 - -
Vifa3g04596 628 ProSitePatterns Legume lectins beta-chain signature. 149 155 IPR019825 -
Vifa3g04596 628 ProSitePatterns Protein kinases ATP-binding region signature. 364 387 IPR017441 GO:0005524
Vifa3g04596 628 CDD lectin_legume_LecRK_Arcelin_ConA 32 266 IPR001220 GO:0030246
Vifa3g04596 628 ProSitePatterns Legume lectins alpha-chain signature. 236 245 IPR000985 -
Vifa3g04596 628 FunFam Lectin-domain containing receptor kinase A4.3 435 560 - -
Vifa3g04596 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Vifa3g04596 628 Gene3D Phosphorylase Kinase; domain 1 343 434 - -
Vifa3g04596 628 PANTHER - 45 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04596 Vifa-Chr3 1317185976 1317187991 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04596 11 595 Receptor kinase-like Gene Family AT5G10530 42.006 3.91e-159 470
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vifa3g04596 Pkinase 4.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04596 - - vun:114193012 790.03