Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04591 ATGTTGGTTTTTGAATATGCGCCAAATGGAACACTATTCGAGCATTTACACGTGAAAGAAGCTGAGCACTTGAACTGGGGACCGAGACTTAGAATTGCGACAGGAATGGCTTACTGCCTACAATACATGCATGGATTAGACCCTCCTGTGGCCCTTACCAATCTGAGTTCTTCAACTGTCCATCTAACAGATGATCATGCAGCAAAAATCTCGGATTTGAGTTTCTCCCGGGAAACAGATTCATCTGAAAAGAAACCTGATGGTAGAAAAGACATTGATATTAATATGACGCAATCAACAAGTCCAGCGAGTAATGTTTATAGCTTTGGTGTTTTGTTATTCGAGATAGTAACCGGTCGGATTCCTTATTCGCTGGATAATAGCTCAGCTGAAAACTGGGCAGCACATTATCTAAAATGGGACAAACCTATGAAGGAAATGGTGGATGCAACTCTAGCATCTTACCAAGAGAATCAGGTGGAACAAGTTGCGGAGTTGATAAAAGATTGTGTGGATCCTGATTCGGAGAAGAGACCGAGAATGAATGAAGTGAGTGAGAGATTGAGAGAAATAACGAAAATGTCGTCTGAGTTTGTAGTTCCTAAACTTTCTCCACTTTGGTGGGCTGAGCTTGAGATTTCTTCTGCATAA 651 0.4147 MLVFEYAPNGTLFEHLHVKEAEHLNWGPRLRIATGMAYCLQYMHGLDPPVALTNLSSSTVHLTDDHAAKISDLSFSRETDSSEKKPDGRKDIDINMTQSTSPASNVYSFGVLLFEIVTGRIPYSLDNSSAENWAAHYLKWDKPMKEMVDATLASYQENQVEQVAELIKDCVDPDSEKRPRMNEVSERLREITKMSSEFVVPKLSPLWWAELEISSA 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04591 216 Gene3D Transferase(Phosphotransferase) domain 1 1 205 - -
Vifa3g04591 216 ProSiteProfiles Protein kinase domain profile. 1 199 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g04591 216 MobiDBLite consensus disorder prediction 73 92 - -
Vifa3g04591 216 SUPERFAMILY Protein kinase-like (PK-like) 1 208 IPR011009 -
Vifa3g04591 216 MobiDBLite consensus disorder prediction 73 97 - -
Vifa3g04591 216 SMART tyrkin_6 1 188 IPR020635 GO:0004713|GO:0006468
Vifa3g04591 216 Pfam Protein tyrosine and serine/threonine kinase 1 188 IPR001245 GO:0004672|GO:0006468
Vifa3g04591 216 PANTHER PROTEIN MALE DISCOVERER 2 1 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04591 Vifa-Chr3 1315713880 1315714615 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04591 1 196 Receptor kinase-like Gene Family AT5G49780 31.925 1.79e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vifa3g04591 PK_Tyr_Ser-Thr 6.6e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04591 - - pcin:129304083 294.664