Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04589 ATGGCAGGAAGTGGCACATTTGCAGAGATTATAGGTGGTGATGTTTTCAACTACTACTCAGATGGCCAGTGGAACAAATCCTCCTCTGGGAAATTTGTTCCTATCATCAATCCAACCTCTAGAAAAATCCATTTCAAGGTCCAAGCCTGTACGCAGGAAGAGGTTAACAAGGCCATAGAATCAGCAAAAGTTGCACAAAAATTATGGGCTAAGACTCCACTTTGGAAAAGAGCCGAGTTGCTTCACAAGGCTGCTGCAATACTGAAGGAACACAAAGCACCTATTGCTGAGTGTCTTGTTAAGGAGATTGCAAAACCAGCCAAAGATGCTGTCACTGAAGTTGTTAGATCAGGGGATTTGGTGTCATATTGTGCTGAGGAAGGGGTGAGATTTCTCGGTGAAGGAAAATTTCTGGTTTCTGATAGTTTTCCTGGAAATGAAAGAACCAAATATTGTCTCACTTCAAAGATTCCACTTGGAGTTGTTTTGGCTATTCCACCTTTTAACTATCCTGTCAATCTAGCTGTTTCAAAGATTGCTCCAGCTCTTATTTCAGGAAACTCCATTGTTCTTAAACCTCCAACCCAGGGTGCTGTTGCTGCACTACATATGGTTCATTGCTTTCATTTGGCTGGTTTCCCTAAAGGTCTTATTAGTTGTGTGACAGGAAAGGGTTCTGAGATCGGTGACTTTCTTACAATGCATCCGGATGTTAGTTGCATAAGTTTCACGGGTGGTGACACTGGAATAGCGATATCGAAAAAGTCTGCAATGATTCCTCTTCAAATGGAGCTGGGTGGAAAAGATGCTTGCATTGTTCTTGAAGACGCTGACTTGGATTTGGTAGCTGCTAACATTGTGAAAGGAGGGTTCTCCTACAGCGGTCAAAGATGCACGGCAGTAAAGGTGGCTTTAGTCATGAAATCGGTTGCAGACACACTTGTAAAGAAAATAAATGACAAAGTGATAAAATTAACCGTTGGACCTCCCGAGGATGACTGCGATATCACACCGGTTGTCACAGAGTCCTCTGCTAACTTTATTGAAGAACTGGTAATGGATGCTAAAAAGAAAGGAGCAACATTCTGTCAAGAATACAAAAGGGAAGGAAATCTCATATGGCCACTTTTGATGGATAATGTTCGGCCCGATATGAGGATAGCAAGGGAAGAACCATTTGGACCAGTTTTGCCTGTAATAAGAATAAATTCTGTTGAAGAAGGAATTCTTCATTGTAATGCTAGCAATTTCGGCCTTCAGGGATGCGTGTTTACGAAAGACATAAACAAAGCAATACTAGTAAGTGATGCAATGGAGACGGGAACGGTTCAAATTAATTCAGCCCCGGCTCGTGGACCTGATCACTTCCCTTTTCAGGGTTTGAAGGAAAGTGGAATTGGTTCTCAAGGAATCACCAATAGTATCAACATGATGACCAAAGTTAAGACCACAATAATCAACTTACCAACACCTTCTTATACTATGGGATGA 1491 0.4185 MAGSGTFAEIIGGDVFNYYSDGQWNKSSSGKFVPIINPTSRKIHFKVQACTQEEVNKAIESAKVAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRFLGEGKFLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALISGNSIVLKPPTQGAVAALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPDVSCISFTGGDTGIAISKKSAMIPLQMELGGKDACIVLEDADLDLVAANIVKGGFSYSGQRCTAVKVALVMKSVADTLVKKINDKVIKLTVGPPEDDCDITPVVTESSANFIEELVMDAKKKGATFCQEYKREGNLIWPLLMDNVRPDMRIAREEPFGPVLPVIRINSVEEGILHCNASNFGLQGCVFTKDINKAILVSDAMETGTVQINSAPARGPDHFPFQGLKESGIGSQGITNSINMMTKVKTTIINLPTPSYTMG 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04589 496 PANTHER ALDEHYDE DEHYDROGENASE 4 495 - -
Vifa3g04589 496 CDD ALDH_F11_NP-GAPDH 15 487 - -
Vifa3g04589 496 Pfam Aldehyde dehydrogenase family 24 483 IPR015590 GO:0016491
Vifa3g04589 496 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 291 302 IPR016160 GO:0016491
Vifa3g04589 496 SUPERFAMILY ALDH-like 16 487 IPR016161 GO:0016491
Vifa3g04589 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 22 483 IPR016162 GO:0016491
Vifa3g04589 496 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 22 281 - -
Vifa3g04589 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 457 IPR016163 GO:0016620
Vifa3g04589 496 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 267 457 - -
Vifa3g04589 496 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 263 270 IPR029510 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04589 Vifa-Chr3 1315421270 1315424160 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04589 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 85.282 0.0 894
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04589 K00131 - gmx:100789108 922.539