Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04586 ATGGCAAACTATCACCGGAACAACGTCGGAAACCTCGTTCTCGGCCACCACCACCACGACCACAACTCAACCAAACCATCAACATTCTCCAACAACTTCCGCCATTGGAACTCCCTCTCCGTCGCATCACTCCGCCGTCTCATCTTCGACGCCGTCACCTGCGGCGCCAGCTCCCGTTTCCACCACCGCCGTCGCAGCCTCGACGAATATGGCAGCGAAGACTTCTCTTCAACCACTAGATCAAACTCTTTTTCATCCAACGAAAAACAACAACAAAAACAAAGCTCCAAACCGAATGCAAAGTCGGAGAAGCTATCGGATCTTCTGAACATGGCGGAGTTAGAGTCCGAAGCAGAGGCGAAGAAAAAGGAAGAAGCTCTGGATAAACTGAAAGAGCTTGTGAAGGATTTGCATCACGAAGAGGACTCAGTGAAGCGTCGAGAAGCTGCAACCACCGTGAGAATGCTCGCGAAAGAGAATTTGGAAGTTCGCGGAACACTCGCGATGCTCGGAGCGATTCCACCTCTCGTCACAATGCTCGATTCGCAAAACCTCGATTCTCAGATCGCTTCTCTCTACGCGTTGCTCAATCTCGGAATCGGAAACGATGCAAACAAAGCAGCCATTGTTAAAGTTGGTTCTGTTCATAAGATGCTTAAGCTTGTTGAATCTTTAGATGGTACTGATTCCGCGGTCTCTGAAGCGATTGTTGCGAATTTCCTTGGATTGAGTGCTTTGGATTCGAATAAACCGATAATTGGGTCGTCTGCTGCACTACCGTTTTTAGTTAGAACTCTCAAGAGTTTAGATAAGAAAAATAGTAGTGATCAAGCTAAGCAAGATGTTCTTAGAGCACTTTACAATCTTTCGATCTTTCCGGCGAATATTGCATTCATTTTGGAAACTGATTTGGTTCCGTTTCTGATTAACTCGATTGGCGACATGGAAGTAACAGAAAGAAACCTTTCGATTCTTAGCAACTTGGTGTCAAGTAGAGCAGGTAGAAAAGCGATAAGTGCTGTTCCTGATGTGTTTCCTATATTGGTCGATGTATTGAATTGGACCGATTCACCGGAATGTCAGGAAAAAGTATCGTATGTTTTGATGGTTATGTCGCATAAATCTTATAGTGACAAGCAGGCCATGATTGAGGCAGGGGTTGTGTCGTCGCTTCTTGAGTTGTCGCTTATTGGTACTACTCTGTCTCAGAATCGGGCGTCAAGGCTATTGGAAAGTTTGAGAATAGATAAAGGGAAACAAGTTTCAGGGAACTACGGCGGAAATTTAGGCACAGCGGTCTCTGCTCCAATTTGCGGAACTTCATCATCGTGTGCAAAACCAGACGGAGGAGGAGGAAAAGGGTGTTCGGAAGAAGACGAAGATATGATGAGCGAAGAAAAGAAAGCAGTGAAGCAATTAGTCCAATTGAGTTTGCAAAACAACATGAGAAAAATCGCAAAGAGAGCCAACTTGCCTCAAGATATCGTTCCTTCAGATCATTTTAAGTCACTCACTTCAAGTTCAACTTCAAAGAGCTTACCATTCTGA 1548 0.4509 MANYHRNNVGNLVLGHHHHDHNSTKPSTFSNNFRHWNSLSVASLRRLIFDAVTCGASSRFHHRRRSLDEYGSEDFSSTTRSNSFSSNEKQQQKQSSKPNAKSEKLSDLLNMAELESEAEAKKKEEALDKLKELVKDLHHEEDSVKRREAATTVRMLAKENLEVRGTLAMLGAIPPLVTMLDSQNLDSQIASLYALLNLGIGNDANKAAIVKVGSVHKMLKLVESLDGTDSAVSEAIVANFLGLSALDSNKPIIGSSAALPFLVRTLKSLDKKNSSDQAKQDVLRALYNLSIFPANIAFILETDLVPFLINSIGDMEVTERNLSILSNLVSSRAGRKAISAVPDVFPILVDVLNWTDSPECQEKVSYVLMVMSHKSYSDKQAMIEAGVVSSLLELSLIGTTLSQNRASRLLESLRIDKGKQVSGNYGGNLGTAVSAPICGTSSSCAKPDGGGGKGCSEEDEDMMSEEKKAVKQLVQLSLQNNMRKIAKRANLPQDIVPSDHFKSLTSSSTSKSLPF 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04586 515 SUPERFAMILY ARM repeat 130 408 IPR016024 -
Vifa3g04586 515 MobiDBLite consensus disorder prediction 69 105 - -
Vifa3g04586 515 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 171 213 IPR000225 GO:0005515
Vifa3g04586 515 SMART arm_5 292 330 IPR000225 GO:0005515
Vifa3g04586 515 SMART arm_5 160 200 IPR000225 GO:0005515
Vifa3g04586 515 SMART arm_5 246 291 IPR000225 GO:0005515
Vifa3g04586 515 SMART arm_5 202 245 IPR000225 GO:0005515
Vifa3g04586 515 MobiDBLite consensus disorder prediction 1 29 - -
Vifa3g04586 515 Gene3D - 96 271 IPR011989 -
Vifa3g04586 515 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 27 515 - -
Vifa3g04586 515 MobiDBLite consensus disorder prediction 72 103 - -
Vifa3g04586 515 Gene3D - 272 424 IPR011989 -
Vifa3g04586 515 MobiDBLite consensus disorder prediction 489 515 - -
Vifa3g04586 515 Coils Coil 109 147 - -
Vifa3g04586 515 MobiDBLite consensus disorder prediction 499 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04586 Vifa-Chr3 1314849390 1314851320 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04586 127 420 U-box Gene Family AT1G67530 30.233 2.90e-30 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04586 - - psat:127098188 849.736