Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04585 ATGTGCCCTGAATGTGTTAACCCACTTAATAATATTGATAAGATATTAGATTGTAATATGCGTCCTACTGTAGCTGGCAAAAGTGATGCCGAAAATTTGGGATCAAAACAAAGCTTGGTCAAACATTATCTTGTTAAGTGGAAGGGACTCTCGTATTTGCACTGCAGATGGGTGCCAGAGGAAGAGTTTGCGAAAGCTTTCAAGAATTATCCTCGTTTAAAGACCAAAGTAAACAACTATCATTGTCAAGATGCACTACTCAAAAGATTGGATGAAGATTTTGTTGCAATTCGACCAGAATGGACTAGTGTTGATCGTATACTTGCTTGCAGGCAAAATGATAATGAGAAGGAATATCTTGTGAAGTGGAAAGAGCTTCCTTATGATGAATGCCATTGGGAGCTTGAGTCAGATATCTTTTTGTTCCAAGCAGAAATAGAGAGATTCAATATATTTCAGTCTAGGACTAGGAAAATTTCTTATAGTAAACAAAAAAGCAGGGCTAATGATGATGCTGAATTGATAAAGCAGCAGAAAGAATTTCAACAATATGAACAAAGCCCAGAGTTTCTTTCAGGGGGTGCACTACATCCATATCAACTCGAAGGATTGAACTTTCTACGATTCTCTTGGGCCAATGAAACCCATGTTATACTTGCTGATGAAATGGGACTTGGAAAAACCATACAAAGTATCGCTTTCTTAGCATCTCTTTTCAAAGAGAATGTTTCTCCACATCTGGTGGTTGCTCCACTTTCTACACTGCGAAACTGGGTGCGGGAATTTGCAACTTGGGCACCTCAAATGAATGTTGTTATGTATTGTGGATCTTCCCAAGCTCGTCGCATTATCAGAGAATATGAATTTTACTTTTCGAAGAATAAAAAGAACAATAAAGTTAAATCTAAAAAAATAGTTACTAGAACAAAGTTGGAAAGCATTAAGTTTGATGTCCTTTTGACATCATATGAGATGATAAACTTAGATACGACATGGTTAAGACCTATCAAGTGGGAGTGCATGATAGTCGATGAAGGTCACCGTCTCAAAAACAAGGATTCTAAATTGTTTTCTTCTTTAAGTCAATACTCTAGCAGACATCGTGTGCTTTTGACAGGAACTCCTCTTCAGAACAATCTGGATGAACTTTTTATGCTTATGCATTTCCTTGATGCTGGGAAGTTTGGAAGTTTAGAGGAGTTCCAAGAAGAGTTTAAGGATATCAATCAAGAGCAACAGATTTCGAGGCTTCATAAAATGTTGGCCCCACATCTCCTGCGAAGAGTGAAGAAAGATGTCCTGACTAAACTACCTCCTAAAAAGGAACTTATTATACGTGTTGAATTGAGCAGCACACAGAGAGAATATTATAAGGCAATTTTGACTCGTAATTATGAGATATTAACTCGCCGTGGTGGAGCACAAATTTCTCTTAACAATGTTGTGATGGAACTGCGTAAGCTATGTTGTCATCCTTACATGTTGGAAGGAGTTGAACCAGTTCTGAACGATGAAAAAGGAAAATACAAACAACTGCTGGAATCATCAGGGAAGTTGCAATTGCTAGACAAGCTGATGATGAAGCTTAAAGAGCAAGGGCACAGAGTCCTAATATATTCCCAATTTCAGAGCATGCTGGACAAGCTTGAAGATTATTGTGTTTATAAGCAATGGCAGTATGAAAGGATAGATGGCAAGGTTGGTGGAGCTGAAAGACAAGTAAGGATAGATCGATTTAATGCTAAAGATTCTTCAAGATTTTGTTTCCTTCTTTCTACTAGAGCTGGTGGAGTGGGAATAAACCTTGCAACGGCTGACACAGTTATTATATATGACAGTGATTGGAATCCTCACGCCGATCTACAGGCTATGGCCAGAGCTCATCGACTTGGACAAACTAACAAGGTGTTGATTTATAGGCTCATAACTCGGGGAACAATTGAAGAAAGAATGATGGAAATGACAAAGAAGAAAATGTTGTTAGAACACTTAGTTGTTGGGAGCATAAAGACTCAAAATTTTAACCAGGAAGAGTTGGATGATATCATAAGGTATGGGTCAAAGGAGTTGTTTGCTGATGAGAATGATGCGGTGAGAAAATCTCGTCAAATTCATTACGACGATGCTGCTATAGACAGATTGTTGAATCGCGATCAAGTTGGAGATGAAGAGGCCACTTTGGATGAGACTGACGAGGATGGATTTCTTAAAGCCTTTAAGGTGGCAAATTTTGAATATATTGATGAAGCTGAGGCTGCAGAAGAAAAAAGTGAAATAGAGGGTAAATTTTCTGTCAGCGGATCAGAAGGGAAAAATTACTGGGAGGAATTGTTAAAAGACAAATATCAAGAGCAAAAAGTTGAAGAGCTTAATGTCTTGGGCAAAGGGAAACGAAACCGCACAAAATTTCTGGTCCGAGATTTTTCTCGTCTAGAAGATGTAAGCTCTGATGGTGAGGATGACAATTACGAAGTGGATCTTACTGATGGCGATTCAAATTCAACAGGAACTACTACTGCTAAAAGACCTTCTAAGAAGAAAGCTCGTAATAACATGGACCCACTTCCTTTAATGGAAGGCGAAGGAAAATCACTAAGAGTACTTGGTTTTAGTCAAAGTCAGAGAGCTGCTTTCCTTCAAATTTTAATGAGGTTTGGGGTCGGCGATTTTGATTGGAAGGAGTTTATTTCTCACATAAAGCAGAAGACTTATGAAGAAATCAAAGAGTATGGAACCCTTTTCTTGTCTCATATTGCTGAAGAGATAAATGATTCCCCTACATTCTCAGATGGTGTTCCAAAAGAAGGATTACGAATACAAGATGTACTTGTTAGAATTGCAGTTCTGCTATTGATAAAGGAAAAAGTGAAGTTTGCATCAGAAAAATCTGGTGCTCCACTTTTTTCAGATGACATCTTGTCACACAACATAGGCTTGAAAGTTACAAAGGCGTGGAAGGAAGAGCATGATTTAGTCTTACTGCATTCAATTTTGAAGTATGGGTATGGAAAGTGGCCAGCTATTGTTGATGATATGGATCTGAATAGTCTGATGGTCATCTGTGAGGAGTTAAATATTCCATTCATAAATATACCACTAGAACAAGTTGGCTCTCATATGCCAAATGGTGCAAATACGACAAATGCGGAATCCACCAGCAATCAGTCTAGGCAAAATAGGGGCAGCGTCATGGCAGTTAAAGGGGCACATGGTTCTTGTGATACTGGGAACCAAGAAAAGTTGCATCAAGAGTCCTCTAAGCTATGTCAATTTAAAGAAATGCAAAGGAAACAAACTGAGTTTGTAAAGAAGAGGTTTCTTCTCTTAGAAAAGTGTATCAATTCTGAGTACCAAAAAGAATATAATGATGATATGAAAGCAAGGGAAGGGACTGATAAAGAACTAAAAAATGAACCTACGGCTACAAATGTAGGAAGGCACGTATTAGGGGGGACTCACACCCAAACGATGGCTCAATTGCCTCAATTAGAACCGATAACTTTTGAAGAAATATGTTCTTCTGTTTGTGATAATGATCCAGATCGGTTGACATTATGTCATCTTTACAATGAGATGTGTGATGCTGTGGATTTAGTTCAAGCATCAGATTCTATGGAGAATTTCCATCAACTAGCAACCACTTGTGACCATGTCAACAGAATTCTAACACCAGAAAATCAACCCACTTCAGAGCCAATAGCAAATTCTGATATCAAACCAGATGTTATATCACAGACTGAAGTTTTGGAGCCTGAGTCGCATTTCATCATCTCTCAAGATGAATGCAAATCTAGAGTTAATGGAGTTTGA 3810 0.3829 MCPECVNPLNNIDKILDCNMRPTVAGKSDAENLGSKQSLVKHYLVKWKGLSYLHCRWVPEEEFAKAFKNYPRLKTKVNNYHCQDALLKRLDEDFVAIRPEWTSVDRILACRQNDNEKEYLVKWKELPYDECHWELESDIFLFQAEIERFNIFQSRTRKISYSKQKSRANDDAELIKQQKEFQQYEQSPEFLSGGALHPYQLEGLNFLRFSWANETHVILADEMGLGKTIQSIAFLASLFKENVSPHLVVAPLSTLRNWVREFATWAPQMNVVMYCGSSQARRIIREYEFYFSKNKKNNKVKSKKIVTRTKLESIKFDVLLTSYEMINLDTTWLRPIKWECMIVDEGHRLKNKDSKLFSSLSQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEQQISRLHKMLAPHLLRRVKKDVLTKLPPKKELIIRVELSSTQREYYKAILTRNYEILTRRGGAQISLNNVVMELRKLCCHPYMLEGVEPVLNDEKGKYKQLLESSGKLQLLDKLMMKLKEQGHRVLIYSQFQSMLDKLEDYCVYKQWQYERIDGKVGGAERQVRIDRFNAKDSSRFCFLLSTRAGGVGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMEMTKKKMLLEHLVVGSIKTQNFNQEELDDIIRYGSKELFADENDAVRKSRQIHYDDAAIDRLLNRDQVGDEEATLDETDEDGFLKAFKVANFEYIDEAEAAEEKSEIEGKFSVSGSEGKNYWEELLKDKYQEQKVEELNVLGKGKRNRTKFLVRDFSRLEDVSSDGEDDNYEVDLTDGDSNSTGTTTAKRPSKKKARNNMDPLPLMEGEGKSLRVLGFSQSQRAAFLQILMRFGVGDFDWKEFISHIKQKTYEEIKEYGTLFLSHIAEEINDSPTFSDGVPKEGLRIQDVLVRIAVLLLIKEKVKFASEKSGAPLFSDDILSHNIGLKVTKAWKEEHDLVLLHSILKYGYGKWPAIVDDMDLNSLMVICEELNIPFINIPLEQVGSHMPNGANTTNAESTSNQSRQNRGSVMAVKGAHGSCDTGNQEKLHQESSKLCQFKEMQRKQTEFVKKRFLLLEKCINSEYQKEYNDDMKAREGTDKELKNEPTATNVGRHVLGGTHTQTMAQLPQLEPITFEEICSSVCDNDPDRLTLCHLYNEMCDAVDLVQASDSMENFHQLATTCDHVNRILTPENQPTSEPIANSDIKPDVISQTEVLEPESHFIISQDECKSRVNGV 1269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04585 1269 MobiDBLite consensus disorder prediction 1040 1062 - -
Vifa3g04585 1269 CDD SF2_C_SNF 516 642 - -
Vifa3g04585 1269 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 10 1134 - -
Vifa3g04585 1269 SMART chromo_7 9 75 IPR000953 -
Vifa3g04585 1269 SMART chromo_7 100 154 IPR000953 -
Vifa3g04585 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 428 IPR027417 -
Vifa3g04585 1269 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 208 393 IPR014001 -
Vifa3g04585 1269 Pfam CHD subfamily II, DUF1087 749 801 IPR009463 -
Vifa3g04585 1269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 430 690 IPR027417 -
Vifa3g04585 1269 Gene3D - 6 95 - -
Vifa3g04585 1269 Gene3D - 940 1120 - -
Vifa3g04585 1269 ProSiteProfiles Chromo and chromo shadow domain profile. 102 149 IPR000953 -
Vifa3g04585 1269 SMART helicmild6 547 631 IPR001650 -
Vifa3g04585 1269 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 521 680 IPR001650 -
Vifa3g04585 1269 MobiDBLite consensus disorder prediction 1040 1079 - -
Vifa3g04585 1269 MobiDBLite consensus disorder prediction 1124 1146 - -
Vifa3g04585 1269 Gene3D - 96 151 - -
Vifa3g04585 1269 MobiDBLite consensus disorder prediction 1124 1140 - -
Vifa3g04585 1269 Gene3D - 188 437 IPR038718 -
Vifa3g04585 1269 SMART DUF1086_2 815 973 IPR009462 GO:0003677|GO:0006338
Vifa3g04585 1269 SUPERFAMILY Chromo domain-like 2 71 IPR016197 -
Vifa3g04585 1269 SUPERFAMILY Chromo domain-like 93 150 IPR016197 -
Vifa3g04585 1269 CDD CD2_tandem 100 149 - -
Vifa3g04585 1269 SMART ultradead3 192 404 IPR014001 -
Vifa3g04585 1269 Gene3D - 438 662 IPR027417 -
Vifa3g04585 1269 SMART DUF1087_2 749 813 IPR009463 -
Vifa3g04585 1269 Pfam Helicase conserved C-terminal domain 518 631 IPR001650 -
Vifa3g04585 1269 MobiDBLite consensus disorder prediction 814 856 - -
Vifa3g04585 1269 Pfam SNF2-related domain 217 495 IPR000330 GO:0005524|GO:0140658
Vifa3g04585 1269 CDD CD1_tandem 8 81 - -
Vifa3g04585 1269 Pfam CHD subfamily II, SANT-like domain 838 970 IPR009462 GO:0003677|GO:0006338
Vifa3g04585 1269 Pfam Chromo (CHRromatin Organisation MOdifier) domain 12 69 IPR023780 -
Vifa3g04585 1269 Pfam Chromo (CHRromatin Organisation MOdifier) domain 103 150 IPR023780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04585 Vifa-Chr3 1314483493 1314502019 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04585 218 692 RAD5 or RAD16-like Gene Family AT1G02670 24.364 2.45e-29 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa3g04585 SNF2_N 6.7e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04585 K11643 - gmx:100790230 1804.65