Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04584 ATGACTTTGGTGGTGGATGAACATAAGATGAATGATAAATTTCCTATTGGAATGAGAGTTCTTGCTGTTGATGATGACAGAACTTGTCTCATGATTTTGGAGAAACTTCTCCTAAAGTGTCAATATCACGTAACTACGGCTAAAAATGCGATAGACGCGCTGAATTTGTTGAGAGAAAACAAAAAGAATTTCGACTTAGTAATCAGTAATGTTCATATGCCAGACATGGATGGATTTAAGCTTCTTGAGCTTATTGGACTTGAGATGGATTTACCTGTCATTATGTTTTCTGCGAATGATGATCCGAAGATGGTGATGAAAGGAATTACTCATGGTGCTTGTGATTATCTGCTGAAACCTGTTAGATTGAAAGAGGTGCAAATTATTTGGCAGCATGTGATTCGGAAGAAGAAAGGTAAAAGAAGCAATTCGGATAGCGTAAATGGAATAGATTCGGCTGTGACAGGAAGTTCGGATCAAAATGTGAAGCCATATAGAAAAAGAAAGGATAAGAATGAAAACGACGATGAGGAAGAGAATGAAGATGATGATGACGACGATGAGGATCCATCGGCGCAGAAGAAGCCTCGAGTTGTTTGGAATGCTGACATGCACCGCATGTTTGTTTCGGCTGTTAATCAATTAGGCATTGACAAGGCTGTGCCGAAAAAGATTCTTGATTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCCAGCCATCTTCAGAAATATAGACTCTATCTGAAAAAAGTCAGTTGTGGGGAAAACCAACAAGCTAATATGTCAGCAGCCTTAGGAAGTTCTGCAGATACATCCTTTTTCAGAATGAATTCTCTCAATGGAGTTGGAGGACATTTGCCAACAATGAATGGCGGCTCTACGCAGTTTCACAACAATCCATTCAGACCCTTTCAATCGAGCGGCATGAGTAACAACAGGCTGAACACACCTGCTAGTGTCAATATTCACGGATCTTACCAACCGGCCATAACTCGCGCCAATCCAAACGATATTCAAAGAACTCCAAATCCTCCTATTGGGCTTGATCAATTGCAACACAATAGAGGTATTAACATTAGTCCTATTATCAACATAACCAATAAATTTTCAGATTATAGACCAAAAGTTCCAATGAGTTGCACACCGTCTTCGGTTTTGGATATCTCAAACAATCCAATGATGATGGAATCAAACTCTTTTTCATTCCCTTCACTTGAGAAAAGAAGATTCAATGATGTTTGGTCAAACACTATGCAATTACCTGGAGTTACTAATAATGTGCAATTTCAAGGTTGGGATAATAACCATATTAATAACAATAATCATGATGGAAATTACCATTCTAATCATGTGATTGGTTCTTCTGTGATTCCTACTGTTGAACAAGAAGAAAACTTGGGCTACAATTATTGTGATTCGTTACAAATGAATGATAGTCGTGTCGCGGATTTATCTGAAGGGCCGTCGATGAAAGCACATCATGTATATATGATGAACCAGATGAAGTCACAAAACAATGGAATCTCTAAGAATATTGGTTCACTCGAAGACGTCGTCAATGACATGGTTAAACAGAAACAATTATATGCTAAGTTCTCTGGTGGGACATCAATGTGA 1623 0.3845 MTLVVDEHKMNDKFPIGMRVLAVDDDRTCLMILEKLLLKCQYHVTTAKNAIDALNLLRENKKNFDLVISNVHMPDMDGFKLLELIGLEMDLPVIMFSANDDPKMVMKGITHGACDYLLKPVRLKEVQIIWQHVIRKKKGKRSNSDSVNGIDSAVTGSSDQNVKPYRKRKDKNENDDEEENEDDDDDDEDPSAQKKPRVVWNADMHRMFVSAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKKVSCGENQQANMSAALGSSADTSFFRMNSLNGVGGHLPTMNGGSTQFHNNPFRPFQSSGMSNNRLNTPASVNIHGSYQPAITRANPNDIQRTPNPPIGLDQLQHNRGINISPIINITNKFSDYRPKVPMSCTPSSVLDISNNPMMMESNSFSFPSLEKRRFNDVWSNTMQLPGVTNNVQFQGWDNNHINNNNHDGNYHSNHVIGSSVIPTVEQEENLGYNYCDSLQMNDSRVADLSEGPSMKAHHVYMMNQMKSQNNGISKNIGSLEDVVNDMVKQKQLYAKFSGGTSM 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04584 540 Gene3D - 191 254 - -
Vifa3g04584 540 SMART REC_2 18 130 IPR001789 GO:0000160
Vifa3g04584 540 CDD REC_typeB_ARR-like 20 134 - -
Vifa3g04584 540 Gene3D - 17 149 - -
Vifa3g04584 540 SUPERFAMILY CheY-like 17 142 IPR011006 -
Vifa3g04584 540 PIRSF RR_ARR_type-B 1 539 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vifa3g04584 540 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Vifa3g04584 540 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 322 IPR045279 GO:0009736
Vifa3g04584 540 NCBIfam myb-like DNA-binding domain, SHAQKYF class 195 248 IPR006447 GO:0003677
Vifa3g04584 540 SUPERFAMILY Homeodomain-like 193 252 IPR009057 -
Vifa3g04584 540 MobiDBLite consensus disorder prediction 145 161 - -
Vifa3g04584 540 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Vifa3g04584 540 MobiDBLite consensus disorder prediction 141 198 - -
Vifa3g04584 540 MobiDBLite consensus disorder prediction 175 189 - -
Vifa3g04584 540 FunFam Two-component response regulator 191 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04584 Vifa-Chr3 1314101827 1314104296 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04584 12 537 Response Regulator Gene Family AT2G25180 41.667 3.46e-113 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa3g04584 Response_reg 3.2e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04584 - K14491 psat:127097478 939.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04584 3 1314101827 1314104296 Vifa2g03939 2 1152502586 1152505769 PCT