Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04578 ATGGAAAGAGTAAGAAAGGAACCATTCATCTTCTCTTGTCAAGAAATTCCTCCAAGTCCAAGCACACCAATACAAAATCAACATGAAAAAAAGAAACAACAATCTATTGATCATGAAGAAGAAGACATGACAACAATCACAAAGGTAGATGTTTCATTATTTGATTTAAATGTATCTACCAATGAAGATTTTGTTCTTGATTGTAATAATAATAATAATAATAATCAAGAACAAGGAACTGAACTCAATCTCATAACTTCTTTAGATGTTGCTAATGATCCATCATTAGAAAGCAATAATAACCTTGTTGAGGTGGAACAAAGAGTTTTTTCTTGTAACTATTGTCATAGAAAATTCTATAGTTCACAAGCATTAGGTGGACACCAAAATGCTCACAAAAGAGAGAGATCTATAGCAAAAAGAGGACAAAGATTTGGAACACAGATTATAGCTTCTTCTGCTTCTGCTTTTGGATTTCCACTTATGCATAATAAACAAACCTATACAAACATGGCTTCTTTGCCACTTTATGGTGCTTTTGGAATTCAAGCACACTCCATGATTCAAAAGCCTTCTCATGTTTCATCTAATGGATTTGGAAGCTCTTATGGACATCATCATCATCATCATGGTTGGTCAACATCATCATCAGCATTATCATCATCAAGAGGAAGTGTTGGTAGATTTGAAGTGGTGGATACTATGAAAAATTCTGCAGCTAATAATGAAATTAGTGGATATTTTGTTAGTGGTGGAACAAGTTTGAAGACACATATCAATCAAGAAGAAATTAACAAGAAACACCTTGATTTATCCCTCAAGCTATGA 828 0.3309 MERVRKEPFIFSCQEIPPSPSTPIQNQHEKKKQQSIDHEEEDMTTITKVDVSLFDLNVSTNEDFVLDCNNNNNNNQEQGTELNLITSLDVANDPSLESNNNLVEVEQRVFSCNYCHRKFYSSQALGGHQNAHKRERSIAKRGQRFGTQIIASSASAFGFPLMHNKQTYTNMASLPLYGAFGIQAHSMIQKPSHVSSNGFGSSYGHHHHHHGWSTSSSALSSSRGSVGRFEVVDTMKNSAANNEISGYFVSGGTSLKTHINQEEINKKHLDLSLKL 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04578 275 Gene3D Classic Zinc Finger 90 158 - -
Vifa3g04578 275 MobiDBLite consensus disorder prediction 15 29 - -
Vifa3g04578 275 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 1 275 IPR044246 GO:0009788
Vifa3g04578 275 ProSitePatterns Zinc finger C2H2 type domain signature. 112 132 IPR013087 -
Vifa3g04578 275 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 137 IPR013087 -
Vifa3g04578 275 MobiDBLite consensus disorder prediction 198 220 - -
Vifa3g04578 275 MobiDBLite consensus disorder prediction 13 40 - -
Vifa3g04578 275 SUPERFAMILY beta-beta-alpha zinc fingers 106 137 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04578 Vifa-Chr3 1312809622 1312810449 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04578 81 275 C2H2 Transcription Factor Family AT5G10970 39.189 5.73e-32 117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g04578 3 1312809622 1312810449 Vifa2g03940 2 1153964026 1153964772 PCT