Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04572 ATGAAGAAAACCCTTGTTTTCTACAGAGGAAGAGCACCCAAAGGTGAAAAGAGTAACTGGGTTATGCATGAATATCGTCTTGAAGGCAAATTTGCTTACCATTTCCTCTCTAGAAACTCCAAGGATGAATGGGTGATATCACGTGTGTTTCAAAAGAGAAACTCCGGAAATGGAAGCACCACCGTGACAGCCACCACCAATGGTTCAAAAAGACCAAAATGGTTTCAACACCCTCTCTGCACGAACAACACCACCACCATTTCCGCCTTCCATCACAAACCGAAACCGCTGCCCTTTGTTCAATTGCAGCGCCTACAGTCCACCTTCATCCGCATCACCACTACTACCTCGGCTGATATCGCAGCTTCTTCCTCCGCTGCTTGCCTCGCGATTTCCAGTTGA 402 0.4726 MKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHFLSRNSKDEWVISRVFQKRNSGNGSTTVTATTNGSKRPKWFQHPLCTNNTTTISAFHHKPKPLPFVQLQRLQSTFIRITTTTSADIAASSSAACLAISS 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04572 133 SUPERFAMILY NAC domain 1 52 IPR036093 GO:0003677|GO:0006355
Vifa3g04572 133 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 83 - -
Vifa3g04572 133 Gene3D NAC domain 1 57 IPR036093 GO:0003677|GO:0006355
Vifa3g04572 133 ProSiteProfiles NAC domain profile. 1 52 IPR003441 GO:0003677|GO:0006355
Vifa3g04572 133 Pfam No apical meristem (NAM) protein 1 27 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04572 Vifa-Chr3 1310400084 1310400485 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04572 1 52 NAC Transcription Factor Family AT5G53950 92.308 1.97e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa3g04572 NAM 2.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04572 - - vun:114185732 125.561