Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04571 ATGGCGAAGAAGAAGAACCCTATGGTGTTTATGGACGTGTCTATAGATGGGGATCCTGCTGAAAGAATGGTTTTCGAGCTTTTCCATGATGTTGCTCCAAAGACTGCTGAAAATTTTCGTGCACTGTGTACCGGAGAAAGAGGAGTCAGTCCTAATACTGGAAAATCCCTGCACTACAAGGGTTCTTTCTTCCATCAAATCATAAAAGGCTCCATTGTGAAGGGTGGTGATTTTATCAATCGAAATGGGACTGGTGGAGAAAGCATTTACCCCAAGTTCCCAGACGAGTCTCCTAAGCTAAAGCATGATTCTCTAGGCATTCTATCTATGGCAATTGCTGATCGTGACACTATTGGTTCACATTTTATCATCACTTTGAAAGCTGATCACCATCTGGATAGGAAGCATGTAGCTTTTGGCAAACTTGTGCTAGGGTATGATGTATTGAAGAAAATTGAAGATGTGGGCGATGAAGGACTCCCATCCGTAACTGTTAAAATAATTAATAGTGGTGAACATAACGAGGATGGTAAGAAGACACAGAAGTCAAAAATTGGAAGGAATGGATCTTCTGAAGCCATCAGTCATGAAGCGCGGAGGAAGGGAAAACACAAAAAATCTTCAGTAGACAGAAGAAAAAAGAGAAAACATTACTCATCAGAATCAGACAGTTCCTCAGATTCAGATACAGAATCTTCAGAAAGTGACAGTGACTCTGACTCGGATTTGTCCTCGTCATCTTACACAAGCTCTTCTAGTGATGACAGGCGGAAGAAGAGAAAGAGATATAGGAAAGATAAACATAGACATGGAAAAAGAAGAGATAAACGCAGAGAAAATAAGCGAAGGAAATTAGATAAGCGATCAAAACATAAGTCAAAGAGGGAATCAGACAGTCAAACTGATGCAGATAGTGCAAGTAAGAGTAATGATAGCTCCAATGGCCAAGGTCTTGATACTCAGAGATATGCCGAAGTCCAGTCATCATCAGTTTTGGAGAAAGAATCATCTCCTATGAATCTTAAAAAGAGGGAGGGGCTGAGCAATGTAGAGGATGGAGAATTCCCAAAGGAAAATGGAGCACAGCGTAGCAACGGCACTGGGGCCAACCATAGATCTGACAGATACGAAGAGAGGCTGCCTGATGTGATGGATGATAATCCTGGAAAATCTAGGAGTCGAAGCATGAGTCCTAAGCAAACCGTGAGCAAGAGTATGAGTATTAGTCCCAAGCGTAGGAGCAAAATCCCAAGCATTAGTCCAAAAGAGAGGTTGATCCGAAGTCCAAGTGGTAGTAAAAGCCCTCATGCTCCATCACAGAGGAGTTTGAGCAGGAGTTCTGTTAGAAGCATCAGCAGGAGTCTTAACAGAAGCATTAGCAGAAGCCCTGTGAGAGGGAGGAAGGGGAGAAGTATCAGCAGAAGCCCTGTGAGAAGTCCTGACCGCAGAAGTTTTAGCAAGAGCCCTGTGAAATCTGTTTCTCAAAGCCGCAGGAGCAGGAGTTTTGCTAGAGTATCAACACAAAGAACAGTCAGTAGGAGTCCTGTGAGAGTGTCAAGAAAGAGCTTCAGCAGAAGTCCAATTATATCACCTGCCAGAAGTCTCAGCAGAAGTTCCGGCCGAGCTCCTTTGAGAAGCATTAGTAGAAGTCCTGTTAGATTGGCAGGTAGAGGGAATCACCGCAGCTACTCAAGGAGTCGTAGCCCTGTCCGTAGGGCAAGAACACCTCGTGAGAGGAGTCTGTCAAGGAGCGTGTCACCTGATGCTTCACCAAAACGTATCAGGAGAGGAAGAGGTTTCAGTGAACGATACTCTTATGCTAGAAGGTACAGAACCCCCTCCCAGTCTCCTGTCAGGTACCGCTCCCGGTCTCCTGTCAGGTACCGCTATAATGGAAGGAATGACCGTGACAGATATTCTGGATACAGAAGGTACTCCCCAAGGCGTAATAGGAGTCCACCGCCACGGAGAAGAACTCCACCAAGGTACCGGAGTAGGAGAAGCAGGACACCATCTGTATCACGCAGCCCACCTTACCGTTCTCGACGGTATAGCCCAAGCCGTAGCCCGGTTCGCCATCGTTCACCTCATGTGAATAGGCGCATGTCATCATCCCTCAGCAGGAGTCCATCTCGATCCAGGTCACCTGTGGAATCACAATCTCCAAGGAAAGCAAGCAAAGATAACAGATCAGGGTCTTCGTCTAGAAGCTCGGATGGAGGGGATGGAGGGAAAGGCTTGGTGTCTTATGGAAATGGTTCTCCTGATTCAAGCCAAAAATGA 2283 0.4577 MAKKKNPMVFMDVSIDGDPAERMVFELFHDVAPKTAENFRALCTGERGVSPNTGKSLHYKGSFFHQIIKGSIVKGGDFINRNGTGGESIYPKFPDESPKLKHDSLGILSMAIADRDTIGSHFIITLKADHHLDRKHVAFGKLVLGYDVLKKIEDVGDEGLPSVTVKIINSGEHNEDGKKTQKSKIGRNGSSEAISHEARRKGKHKKSSVDRRKKRKHYSSESDSSSDSDTESSESDSDSDSDLSSSSYTSSSSDDRRKKRKRYRKDKHRHGKRRDKRRENKRRKLDKRSKHKSKRESDSQTDADSASKSNDSSNGQGLDTQRYAEVQSSSVLEKESSPMNLKKREGLSNVEDGEFPKENGAQRSNGTGANHRSDRYEERLPDVMDDNPGKSRSRSMSPKQTVSKSMSISPKRRSKIPSISPKERLIRSPSGSKSPHAPSQRSLSRSSVRSISRSLNRSISRSPVRGRKGRSISRSPVRSPDRRSFSKSPVKSVSQSRRSRSFARVSTQRTVSRSPVRVSRKSFSRSPIISPARSLSRSSGRAPLRSISRSPVRLAGRGNHRSYSRSRSPVRRARTPRERSLSRSVSPDASPKRIRRGRGFSERYSYARRYRTPSQSPVRYRSRSPVRYRYNGRNDRDRYSGYRRYSPRRNRSPPPRRRTPPRYRSRRSRTPSVSRSPPYRSRRYSPSRSPVRHRSPHVNRRMSSSLSRSPSRSRSPVESQSPRKASKDNRSGSSSRSSDGGDGGKGLVSYGNGSPDSSQK 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04571 760 MobiDBLite consensus disorder prediction 628 644 - -
Vifa3g04571 760 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 9 172 - -
Vifa3g04571 760 MobiDBLite consensus disorder prediction 432 461 - -
Vifa3g04571 760 MobiDBLite consensus disorder prediction 257 290 - -
Vifa3g04571 760 MobiDBLite consensus disorder prediction 700 740 - -
Vifa3g04571 760 MobiDBLite consensus disorder prediction 303 336 - -
Vifa3g04571 760 MobiDBLite consensus disorder prediction 649 669 - -
Vifa3g04571 760 Gene3D - 1 181 IPR029000 -
Vifa3g04571 760 MobiDBLite consensus disorder prediction 390 414 - -
Vifa3g04571 760 MobiDBLite consensus disorder prediction 171 760 - -
Vifa3g04571 760 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Vifa3g04571 760 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Vifa3g04571 760 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 133 IPR002130 GO:0000413|GO:0003755
Vifa3g04571 760 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 106 121 IPR002130 GO:0000413|GO:0003755
Vifa3g04571 760 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 134 149 IPR002130 GO:0000413|GO:0003755
Vifa3g04571 760 MobiDBLite consensus disorder prediction 337 358 - -
Vifa3g04571 760 MobiDBLite consensus disorder prediction 486 545 - -
Vifa3g04571 760 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 11 169 IPR002130 GO:0000413|GO:0003755
Vifa3g04571 760 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 172 IPR002130 GO:0000413|GO:0003755
Vifa3g04571 760 MobiDBLite consensus disorder prediction 199 213 - -
Vifa3g04571 760 MobiDBLite consensus disorder prediction 171 185 - -
Vifa3g04571 760 MobiDBLite consensus disorder prediction 589 605 - -
Vifa3g04571 760 MobiDBLite consensus disorder prediction 370 389 - -
Vifa3g04571 760 SUPERFAMILY Cyclophilin-like 4 173 IPR029000 -
Vifa3g04571 760 FunFam Peptidyl-prolyl cis-trans isomerase CYP95 1 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04571 Vifa-Chr3 1310013671 1310019965 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04571 25 155 U-box Gene Family AT5G67530 40.602 5.12e-18 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04571 K09566 - jre:109001815 588.956