Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g04570 ATGGATTCTCCAGAACCTTCTCAGATCAAGCACACTCCTTCTCTCTCCACTCTCAATCCATCCATTACTCCTTCTCATGAATCTCCTCAAGTTCAAGAATCTCCCTTTTTAAGATTTGTCAACACACTTTCTCCAATACAGCCTGTTAAGGCTTCTCACGTGACACATGGCTTTCTTGGACTCAATTCTCCACCTCTTGTATTCAAATCACCGCGAATTAGCGGTCACCACCGTGAAGCGCAAAGCTCGGAAAGGCCCGATGGAACCCATTTATCCGGTGGAGAAATATCTCAACCTGACATTGCTGACATTGGAGACAACTGTGTTGGTGAAGCTCATGGTGATTTGAAAAAATTGAATCCTCAGCAGCCACTGTCAGAGGGATTTACAACAGACGCTCAGAATGACATTAGTACCCAAAGCTGCAGTCCTCCACCATCTGTCGATAAATATTTGGCCGATCCCGGGGATGATCAAATGTATCCTGTCAACCTAGAAATGGAACAGTCCACTGACGCAGTTGGGTCATCATTAACTGAGTCGGAGAAAGTTATATTAGAAGTTGATAGGAGCGATGGTCCTGCTAACAAAGCAGAAGAACTTTTGCCTTTGTTAGAGGAATCTAATATGGTTCATCATGAAAGGCCAGCGTATTCTGAAAATCTTGCAATAATGGAAGGGGAGAAAGATGGTGCTGAATGGGTTCCTCAAGAGGTCACAAATTTAGACTCCAGTTCAGGTGCGGATGTTTTTGATAATCAACATTCTCATGATTCACTTCCCCAGTGTGCAGGAAATGATCAACGACATCATAGTGACTGTACACCTCAATTGATGCCTGATCCTATCCAGGATATTAAAGAATTTGAAAATTGCAATGAGATGATGTCAACCTCGCAAGTAAATTCAGAGAATATCCCACAAGATGGTTCTGAGGCAAGTCTAAAGCATCATGGCATCCCTAGACGCTGCCTACAATTTGGGGAAGCTGCTTCTGTTACTCTTGGAAGTAATAAGTTTCATGTGAAATTAAATGCAACTTCACGCGACATGAAAATGCTTCCTGTGACAGCTTCCAAGCCACCAGGCATTGGGTTGCATTTAAATAGCATTATAAATGCAGTGCCCCTTAGTTGTCCTTCATCTACTGGGGTGAGATTATCAGATGGTTTACAAGGGATGCACTCCAAATCTTCTATAACTTTGCATAAAGTGGAAAATGCGGCAAAATCCTCAATTCCGACCGATATGGATGGTCAATCGTTTATTGATACTAGAAATAAGAGCCATGAAACTGACGCCCCAGTAGCTGCAGATTATTTCATTTCCGAATCTCCTATCATGACAGAGTCCATTGATCTATATCTGGAAAATGCATGTGATAAGAGAAGAGTAAGCCCTGCAGATACCGAGAATACAGAGGAATTCAATCATCCTAACACCTCGAAGAAAAAGAAGAAAACAAATACTGATGATGCTGATGGCCCTAAGGGGTGCAACTGTAAGAAGAGTAAATGTTTGAAACTTTATTGTGATTGTTTTGGCGCCGGCCTCTTCTGTGGCGAAGCTTGTGCTTGCGACAGCTGTGGTAATAGAGTAGAATTTCAGGAGACAGTTGTTGAGACAAAGCACCATATTGAATCCCGTAATCCAGATGCATTTGCTCCCAAGATTGTAAAATGTGCGGCTGATATTCCACAACATAATATGGAAGATGTGGATATGGCAACACCGGCATCAGCTAGGCACAAACGAGGTTGCAATTGCAAAAGGTCAATGTGTACTAAAAAATATTGTGAATGTTTTCAGTCTAAAGTTGGATGCTCAAGTGGATGTCGATGTGATGGATGTAAGAATGCCTTTGGCAAGAGAGAAGATTTTGTGGCAAAGGAGCATGCTTTGAGCAAAGAAAGGGAGCGCAGCATTGTTGAAGCAGCGTTGGATGAAGAAGCGTTGGATGACAAGCTGCACAGTAGACCGAAAATGGTGACGATCAGGACAGGCTTGTTACGACCAGCAAATCACCTCTCACCTGTAACACCGTCGTTGCAATGCTCCGACCAAGGCAAGCAGGGTACAAAGTATAGACTTGCTTCCGCAGACTCGACTCAATCTTCCAAAAAATCACGGAGTAATCTTGCACATACAGAAACAAACGACTCTCAAAAGAATGCACCTACAGGGGCTTCATCTAAAGAAAGTGAGTTGATAGATCTTCCACCATATCAACTCTCCAACAGATGTGGTATTCGCCAGTTATCCGGGGGTTCTCTTCGTTGGCGCGGTAGTTCACCAATTACTCCAAGCATTAACTTAGATAGTGAATCAGATGGCAAGCTCTTTGACATTCTAGAAGATGAAACACCTGATATACTGAAAGAAGCTTCAACTCCCACCAAGTCTGTGAAAGCAAATTCTCCACTCCAAAAGAGAGTTTCTCCTCCACACAGTCATCTACTTCGGATTGGGTCAAGCTCTTCAGGGGGTGGCTTGAAAAGTGGCAGGAAATTTATATTGCAATCTGTTCCTTCTTTTCCGCCATTGACCCCTTGTGCTGATTCCAGAGTTGTTTGCAATGGCAAGGAAGATTCAAGTACAGCACAGAGAAAATGA 2613 0.4305 MDSPEPSQIKHTPSLSTLNPSITPSHESPQVQESPFLRFVNTLSPIQPVKASHVTHGFLGLNSPPLVFKSPRISGHHREAQSSERPDGTHLSGGEISQPDIADIGDNCVGEAHGDLKKLNPQQPLSEGFTTDAQNDISTQSCSPPPSVDKYLADPGDDQMYPVNLEMEQSTDAVGSSLTESEKVILEVDRSDGPANKAEELLPLLEESNMVHHERPAYSENLAIMEGEKDGAEWVPQEVTNLDSSSGADVFDNQHSHDSLPQCAGNDQRHHSDCTPQLMPDPIQDIKEFENCNEMMSTSQVNSENIPQDGSEASLKHHGIPRRCLQFGEAASVTLGSNKFHVKLNATSRDMKMLPVTASKPPGIGLHLNSIINAVPLSCPSSTGVRLSDGLQGMHSKSSITLHKVENAAKSSIPTDMDGQSFIDTRNKSHETDAPVAADYFISESPIMTESIDLYLENACDKRRVSPADTENTEEFNHPNTSKKKKKTNTDDADGPKGCNCKKSKCLKLYCDCFGAGLFCGEACACDSCGNRVEFQETVVETKHHIESRNPDAFAPKIVKCAADIPQHNMEDVDMATPASARHKRGCNCKRSMCTKKYCECFQSKVGCSSGCRCDGCKNAFGKREDFVAKEHALSKERERSIVEAALDEEALDDKLHSRPKMVTIRTGLLRPANHLSPVTPSLQCSDQGKQGTKYRLASADSTQSSKKSRSNLAHTETNDSQKNAPTGASSKESELIDLPPYQLSNRCGIRQLSGGSLRWRGSSPITPSINLDSESDGKLFDILEDETPDILKEASTPTKSVKANSPLQKRVSPPHSHLLRIGSSSSGGGLKSGRKFILQSVPSFPPLTPCADSRVVCNGKEDSSTAQRK 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g04570 870 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 19 854 IPR044522 GO:0003700
Vifa3g04570 870 MobiDBLite consensus disorder prediction 694 735 - -
Vifa3g04570 870 MobiDBLite consensus disorder prediction 796 833 - -
Vifa3g04570 870 ProSiteProfiles CRC domain profile. 495 622 IPR005172 -
Vifa3g04570 870 MobiDBLite consensus disorder prediction 70 147 - -
Vifa3g04570 870 MobiDBLite consensus disorder prediction 466 495 - -
Vifa3g04570 870 MobiDBLite consensus disorder prediction 850 870 - -
Vifa3g04570 870 MobiDBLite consensus disorder prediction 1 33 - -
Vifa3g04570 870 MobiDBLite consensus disorder prediction 123 146 - -
Vifa3g04570 870 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 585 620 IPR005172 -
Vifa3g04570 870 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 497 532 IPR005172 -
Vifa3g04570 870 SMART CXC_2 582 623 IPR033467 -
Vifa3g04570 870 SMART CXC_2 494 535 IPR033467 -
Vifa3g04570 870 MobiDBLite consensus disorder prediction 796 812 - -
Vifa3g04570 870 MobiDBLite consensus disorder prediction 694 731 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g04570 Vifa-Chr3 1309431252 1309437622 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g04570 564 850 CPP Transcription Factor Family AT4G14770 27.729 1.60e-13 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vifa3g04570 TCR 1.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g04570 K21776 - gmx:547664 761.525